SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23781

Length: 2609 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23781
CGTCGTGACCTTGGCTGTCACTCAATTTTTTTTGCAACACTGAATACAGTACCTGTTGAGTGTTGTCTACTCGCGTTTCATTTGGAGATTGTCGAGAATGCGTTTGATTCTGCAGAGCCTCAGGAAAAATGGAGCTGGATTTGCTCGTTTCTATGGACTCAATTATGCACCGGCAATGCTCCGTCAGTTTCCACATAACCTTTCTTCAAGAGAGGAACTTTCAACAGCGTCTAAATTTTCTAGATCTCAAAGTTCTCGCTTAGAGAAGAAGCCTTATGTTTCTTCTGGTTCTGCTCCACCACCTGCATCCCCAGGTTCTGGAAATCAATTAAAGCTGCTCCTAGGAGGTAGTGCAGTTCTTGCTGTGATTGCTGTTCTTGTAAGTCTCCCCAGCATTAGAAGCAAAAGAGAACAGGTATCTATACTCGATGAAACTGAGCAGAGTGATGCAAAAGGTTCTGAAGTTACTGGTAACAGTGACCTGAAAGATGAGGACAGCACTCATAGCAAGGAAGATGTTATTAGTTCCAATCTCGGTCACGAAAAAGAGCAGGTTAAAGAGGAAATGAAACAAAACTATGAATCCCATGAAACACGCCCAGGACAAGAAGAGTCAGATGGTATGCTAAAGGAAAAGAAAATAGAGGATTCTGAAATTCATAAAGAGCAAGAAGTAGACAGTACTAGTGAAAGTACATCGGGCTTTTCTAATGAGAATGGGCAAGAAGTAAAAAATACCGAGTCTTCAAATAACATTGAGGATGATACATCTTTGCATGTTGAGAATGGGATATCCAAACAAGAAATTCTTTCAGAAGTGGACAGCGGGATGAAAAATGCAGATGTTAAAGAGACATACGAAAACACAGATGGCAGCCAAGAACTGGGAGCTGGTGGCGCACAGAGTGATAGGATGGATAGTGAGATTATAGTAGAGCCTTATCATGATGTTATTGCATCAGAAGTTTTGAAGCAGGATGCTGCTTCTGAAGATCAACAGCCCTTGGATACGGACTCTGATACAGATTTTCTCCCAAAGGGGCATGGTAACAAGTCGCAGGGAGTTTCAAGTATGGAGGATCATAGTGAATCAAAGTCCGTCTCCGAGCTAAAAGAGGATGCAAAGGAAGGGATCGAAAGTATAAAGGAGAAAGATATTTCAAAGGATGGTTCTTTGGTTCTCAACTTTATTGAAGCAATTCATGCAGCTGAACAGAGACAAGCTGATTTAGATGCCCATATCTATGCTGAGTACAAACAAAAATTAGAAGGAAAAATAATGAGAAGGAGCTTAAGGATGCGAGGGCAAGGGAGCTTATGTATGCAGAGGAGGCAGATAGTTTAGAAAAGGAATTGAATAAGGAAAGAGAAAAAGCAATTGCTGCTATAAAGTCGCTTGATGAAAAAGCAGAGGAACGGCTGAAGTCCGAGCTCCGCCGCAAGGAAGAAGAGACAGGTATGAAGCTCAAGAAGGCCCAGCTGCTTGCAAAAGCAGAAACAACTGCAGCTATTGCAAAGGAAAAGTCATCCTATTTGAATGATATGGCGGATGCCAATCTTCAAATTAATGCCCTGCGCATGGCTTTTTATGCTCGTTCAGAGGAGGCTCGTCAAAGTCACTCTTTGCACAAGCTTGCTTTGGGAACATTTGCTCTAGAAGATGCATTAATGCAGGGTGCACCTTTTGATAAAGAAATAGCTGTACTCCGTGCATCTGTGGAAGGCATTGATAAAGATGTACTTTTAGATGTGGCACTAGCATCATTACCGCCAGAAACATTAACACATGGAACAAAAACTGAGGCACAGCTGTATCAAACGTTTGAATCCCTAAAGGGGACATTGCGAGAGCTTGCACTTATTCCAGCTGGCGGTGGAGGTCTTTTGACTCATGCTTTGGCTCACTTTGCTTCTGCTATGAAGGTCAAAGAAGATGGGTTACATTCTGAGGGTATTGAATCCGTCATTGCTCATGCTGAGCAGTTTTTGGCCGAAGGAAAGCTTATTGAAGCAGCTGATGCTTTAGAGAAGGGTGCACAAGGGAGCAAAGCTGAAAGTCTTGCTGCTGAGTGGGCAAGACAGGCTCGTAACAGGGCTGTCACTGAGCAAGCCTTGTCTCTCTTGCGGGCCTATGCTATTGCGATAGCTTCGACTCTCACCTGATTTTTCAGAAGCTGCAGCTATACGTCATATTTTGAGAGATTTTGCCTTCTCTTGAACGGGACTTGTCATCTCTATGAACTTTTTTCTTTCGAAATGTAATCTCTGAGCAATTTTATTTAGCTTCCAGGGTGCTTGGTTTAGCAATTTATGTTAGGACCAATTGGTCAACATGGGTGGGAAATATCGTTGTTTATAATTAAAAAATTCATGCTGGCTCAAATTTGCTTCTTATACATAATCTATCGGGTCCATTACAACCACCTGAGTAGTTCTCTGCTTCAGATTGTACTGGTGCTGACATCTGAAATAATTCAGTCATATTCTTCCTTCTGCAGAATCTGTTTTTGAATGTAACGCCCAAAACAGTAAGCTGTTGTGGGACATTTCATTTCAATAAAGGCAATCTTCCAAGGGTTTCAACAGGGCTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene23781

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin class II heavy chain (ISS) [Ostreococcus tauri] emb\|CAL54575.1\| Myosin class II heavy chain (ISS) [Ostreococcus tauri]	-	-	2.0e-14	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMA4

Fln msg:

Fln protein: MELDLLVSMDSIMHRQCSVSFHITFLQERNFQQRLNFLDLKVLA*

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTTGCAACACTGAATACAGTACCTGTTGAGTGTTGTCTACTCGCGTTTCATTTGGAGATTGTCGAGAATGCGTTTGATTCTGCAGAGCCTCAGGAAAA_-_ATGGAGCTGGATTTGCTCGTTTCTATGGACTCAATTATGCACCGGCAATGCTCCGTCAGTTTCCACATAACCTTTCTTCAAGAGAGGAACTTTCAACAGCGTCTAAATTTTCTAGATCTCAAAGTTCTCGCTTAG___AGAAGAAGCCTTATGTTTCTTCTGGTTCTGCTCCACCACCTGCATCCCCAGGTTCTGGAAATCAATTAAAGCTGCTCCTAGGAGGTAGTGCAGTTCTTGCTGTGATTGCTGTTCTTGTAAGTCTCCCCAGCATTAGAAGCAAAAGAGAACAGGTATCTATACTCGATGAAACTGAGCAGAGTGATGCAAAAGGTTCTGAAGTTACTGGTAACAGTGACCTGAAAGATGAGGACAGCACTCATAGCAAGGAAGATGTTATTAGTTCCAATCTCGGTCACGAAAAAGAGCAGGTTAAAGAGGAAATGAAACAAAACTATGAATCCCATGAAACACGCCCAGGACAAGAAGAGTCAGATGGTATGCTAAAGGAAAAGAAAATAGAGGATTCTGAAATTCATAAAGAGCAAGAAGTAGACAGTACTAGTGAAAGTACATCGGGCTTTTCTAATGAGAATGGGCAAGAAGTAAAAAATACCGAGTCTTCAAATAACATTGAGGATGATACATCTTTGCATGTTGAGAATGGGATATCCAAACAAGAAATTCTTTCAGAAGTGGACAGCGGGATGAAAAATGCAGATGTTAAAGAGACATACGAAAACACAGATGGCAGCCAAGAACTGGGAGCTGGTGGCGCACAGAGTGATAGGATGGATAGTGAGATTATAGTAGAGCCTTATCATGATGTTATTGCATCAGAAGTTTTGAAGCAGGATGCTGCTTCTGAAGATCAACAGCCCTTGGATACGGACTCTGATACAGATTTTCTCCCAAAGGGGCATGGTAACAAGTCGCAGGGAGTTTCAAGTATGGAGGATCATAGTGAATCAAAGTCCGTCTCCGAGCTAAAAGAGGATGCAAAGGAAGGGATCGAAAGTATAAAGGAGAAAGATATTTCAAAGGATGGTTCTTTGGTTCTCAACTTTATTGAAGCAATTCATGCAGCTGAACAGAGACAAGCTGATTTAGATGCCCATATCTATGCTGAGTACAAACAAAAATTAGAAGGAAAAATAATGAGAAGGAGCTTAAGGATGCGAGGGCAAGGGAGCTTATGTATGCAGAGGAGGCAGATAGTTTAGAAAAGGAATTGAATAAGGAAAGAGAAAAAGCAATTGCTGCTATAAAGTCGCTTGATGAAAAAGCAGAGGAACGGCTGAAGTCCGAGCTCCGCCGCAAGGAAGAAGAGACAGGTATGAAGCTCAAGAAGGCCCAGCTGCTTGCAAAAGCAGAAACAACTGCAGCTATTGCAAAGGAAAAGTCATCCTATTTGAATGATATGGCGGATGCCAATCTTCAAATTAATGCCCTGCGCATGGCTTTTTATGCTCGTTCAGAGGAGGCTCGTCAAAGTCACTCTTTGCACAAGCTTGCTTTGGGAACATTTGCTCTAGAAGATGCATTAATGCAGGGTGCACCTTTTGATAAAGAAATAGCTGTACTCCGTGCATCTGTGGAAGGCATTGATAAAGATGTACTTTTAGATGTGGCACTAGCATCATTACCGCCAGAAACATTAACACATGGAACAAAAACTGAGGCACAGCTGTATCAAACGTTTGAATCCCTAAAGGGGACATTGCGAGAGCTTGCACTTATTCCAGCTGGCGGTGGAGGTCTTTTGACTCATGCTTTGGCTCACTTTGCTTCTGCTATGAAGGTCAAAGAAGATGGGTTACATTCTGAGGGTATTGAATCCGTCATTGCTCATGCTGAGCAGTTTTTGGCCGAAGGAAAGCTTATTGAAGCAGCTGATGCTTTAGAGAAGGGTGCACAAGGGAGCAAAGCTGAAAGTCTTGCTGCTGAGTGGGCAAGACAGGCTCGTAACAGGGCTGTCACTGAGCAAGCCTTGTCTCTCTTGCGGGCCTATGCTATTGCGATAGCTTCGACTCTCACCTGATTTTTCAGAAGCTGCAGCTATACGTCATATTTTGAGAGATTTTGCCTTCTCTTGAACGGGACTTGTCATCTCTATGAACTTTTTTCTTTCGAAATGTAATCTCTGAGCAATTTTATTTAGCTTCCAGGGTGCTTGGTTTAGCAATTTATGTTAGGACCAATTGGTCAACATGGGTGGGAAATATCGTTGTTTATAATTAAAAAATTCATGCTGGCTCAAATTTGCTTCTTATACATAATCTATCGGGTCCATTACAACCACCTGAGTAGTTCTCTGCTTCAGATTGTACTGGTGCTGACATCTGAAATAATTCAGTCATATTCTTCCTTCTGCAGAATCTGTTTTTGAATGTAACGCCCAAAACAGTAAGCTGTTGTGGGACATTTCATTTCAATAAAGGCAATCTTCCAAGGGTTTCAACAGGGCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene23781___MELDLLVSMDSIMHRQCSVSFHITFLQERNFQQRLNFLDLKVLA
A9NMA4_______________MELGLPVSIDPIIHQQCSASIHITFLQERNFQQRLNLLDLKVQA

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
26	33			66	0.997452
28			33	66	0.997452
29	16		8	75	0.99999
31			16	83	0.999991
32			16	83	0.999991
33			16	83	0.999991
275			20	79	1.0
391		87		12	0.992554
392	87	12			0.992554
396			12	87	0.992554
403		75		25	1.0
404	87		12		0.992554
406	87	12			0.992554
412	87	12			0.992554
417		28		71	1.0
468		71		28	1.0
476	71		28		1.0
483		14		85	0.993533
1609		33		66	0.997452
1860		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain