SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23777

Length: 970 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23777

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactose oxidase precursor, putative (EC:1.1.3.9)	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	54%
Blast2go	galactose oxidase	-	-	60%

Source	InterPros	Term	Type	Identity
Blast2go	Immunoglobulin-like fold	IPR013783	-	60%
Blast2go	Immunoglobulin E-set	IPR014756	-	60%
Blast2go	Domain of unknown function DUF1929	IPR015202	-	60%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8RX29

Fln msg: Separated hits, possible frame ERROR between 255 and 257, your sequence is shorter than subject: 287 - 495

Fln protein: RRDLGCHSMLPLSASDAFRRTEIMICGGAPVDSYNLSLAGIFIDALQSCGRMVITDPNADWAMENMAARRVLGDMLLLPTGEILxxGCAGYGQATNPALAPYLYRPNALPGQRFSVLASSTVPRMYHSTAIVLPDGRIFVGGSNPNANYTFTDMFPTELRLQAYSPYYLDESSLKPTIISVLPASVTYGGSFKVQFAANNHRNLSIQFNIYPPTFTTHSFSMHQRLLLLASATPQLELEGGAGQNIYSALVTAPPTPVAAPPGYYMLFVLNSGIPSAATWIHLSSD*

Protein Length: 288

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTACCACTGTCCGCATCTGATGCATTTCGGAGGACAGAAATTATGATCTGCGGTGGTGCTCCTGTTGACAGTTACAATTTGTCACTTGCAGGGATTTTCATTGACGCGCTCCAGAGCTGTGGAAGAATGGTTATCACAGATCCCAATGCCGATTGGGCAATGGAGAACATGGCTGCTCGCAGAGTTCTGGGAGATATGCTGCTTCTTCCCACCGGTGAAATTCTGATxxxGGGATGTGCAGGTTATGGGCAAGCAACCAATCCAGCTCTTGCTCCTTATTTATACAGACCTAATGCATTGCCAGGGCAGCGCTTCTCAGTACTCGCAAGTTCCACTGTTCCAAGAATGTATCATTCCACTGCAATTGTATTGCCTGATGGTAGGATTTTTGTGGGAGGTTCCAACCCCAACGCAAATTATACTTTCACCGATATGTTTCCCACAGAGCTTCGTCTGCAAGCATACAGTCCTTATTACTTAGACGAATCTTCCCTGAAGCCCACCATCATTTCTGTGCTGCCTGCTTCGGTCACTTATGGCGGTAGCTTCAAGGTTCAATTCGCTGCAAATAATCATCGTAACCTTTCCATTCAGTTCAACATTTATCCTCCGACCTTCACTACTCACTCTTTTTCCATGCACCAGAGGTTGCTTCTGCTTGCATCTGCCACCCCACAATTAGAATTAGAAGGAGGAGCAGGGCAAAATATTTATAGTGCCCTAGTAACGGCACCTCCCACCCCTGTTGCAGCACCGCCTGGGTACTACATGCTATTCGTGCTCAACAGTGGAATACCCAGCGCTGCCACTTGGATTCATTTGTCTTCTGATTAGACTCATCCTTCTGCTTTGACATTCTCAATAATCTCATATGTACTGTACGCTACCCTACTCTACCGTAGTGTAACCTTTCGTACATTTCTTTCACCAATGTAGTGAAAGAGC

Fln Alignment:

sp_v1.1_unigene23777___GCHSMLPLSASDAFRRTEIMICGGAPVDSYNLSLAGIFIDALQSCGRMVITDPNADWAMENMAARRVLGDMLLLPTGEILIxGCAGYGQATNPALAPYLYRPNALPGQRFSVLASSTVPRMYHSTAIVLPDGRIFVGGSNPNANYTFTD-MFPTELRLQAYSPYYLDE--SSLKPTIISVLPASVTYGGSFKVQFAANNHRNLSIQFNIYPPTFTTHSFSMHQRLLLLASATPQLELEGGAGQNIYSALXXXXXXXXXXXXGYYMLFVLNSGIPSAATWIHL
D8RX29_______________GSSVMLPLLASQRFQRVEVLICGGASKTAYKQASSGSFETALKTCGRMVVTDNNPSWILEEMPLPRVMGDMLNLPTGEVLIxGTAGWRFARNPALTPLLYSPSSTSSSKFTTLASASIPRMYHSTAILLPDTRVLVAGSNPNVGYDFSEVLFPTELRIEAFSPPYLDSYFDGVRAEISSMSKVVIGYNSQITIEFSVSVLGD--TEATLYAPAFATHAYSMNQRLLKLESSTPVLDENSG----YYTFVVRAPPTKTIAPPGYYMLFVVNSGVPSIGKWIQM

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
493			28	71	1.0
510	87	12			0.992554
511	87		12		0.992554
515			12	87	0.992554
516	12	87			0.992554
521	87			12	0.992554
522	87		12		0.992554
525		87		12	0.992554
526		87	12		0.992554
527	87			12	0.992554
529	12	87			0.992554
530	87	12			0.992554
537	20	80			0.999996
549	20	80			0.999996
587		20	80		0.999996
633		90	10		0.90298
636		90	10		0.90298
637		20	80		0.999996
638	90			10	0.90298
639		90		10	0.90298
642			10	90	0.90298
643		90	10		0.90298
644	90		10		0.90298
645		90	10		0.90298
648		80	20		0.999996
650		90	10		0.90298
653	10			90	0.90298
654		90	10		0.90298
655			11	88	0.923564
656		11		88	0.923564
657		11		88	0.923564
746		66	33		0.997452
807		66	33		0.997452
824		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain