SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23776

Length: 1411 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23776

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily	-	-	3.0e-40	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Trimeric LpxA-like	IPR011004	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZX3

Fln msg:

Fln protein: MGTLGRVIYMAGHLFRETGQAIDRLGCRLQGNYGFQEQLSRHRTLMNIFEKAPSLHRDVFVAPSAAVMGDVKVGQGSSIWYGSVLRGDVNSIVVGSGTNIQDNTLVHVAKTNLSGKVLPTLIGNNVTIGHGAVLHGCTVEDEAFVGMGATLLDGVFVEKNAMVAAGSLVRQNARIPSGEVWAGNPAKFLRKLTDEEIEFISQSALNYQSLAEMHARENAKSYDEIEAYKVLRKKLARQSDDYDSHLGVVREFPPELIVPDRVIEGKLPAREPF*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCTCCTAGGAACTATGAGCATGTCTTGTGAGGACATTAGCAGGCCTGTAGACACTATACATTATCCATGTTGTTTTAATCATCTCCAAGTCCATGGTGGACGTGAAAACTTCGTCTAATAAGATTAATAGGTCTGACCTTGGTTGTTATTCATTTTCCGTTCGTCCCCTGATTCATGCTGGCTTCCTTACTTTCCATCTAACAGGATATAGTTCCCAGCCATTCGGAGCAGGGCTCCATATATTGATCAGAACTGAGAGCTTACAGTTTGCTCATACTTTTAGAAACTGACGA_-_ATGGGGACTCTCGGAAGAGTTATCTACATGGCTGGGCATTTGTTTCGCGAGACGGGGCAGGCCATCGACCGTCTAGGATGCCGTCTTCAGGGCAATTACGGCTTCCAAGAGCAATTATCGAGGCATAGAACACTGATGAACATCTTTGAAAAAGCTCCAAGTCTGCACAGAGATGTCTTTGTTGCTCCAAGTGCAGCTGTTATGGGAGATGTAAAAGTGGGCCAAGGATCATCAATTTGGTATGGCTCTGTTCTTCGAGGGGACGTAAATAGCATAGTGGTTGGTTCTGGTACAAATATACAGGACAACACTCTTGTGCATGTTGCAAAAACAAATCTTAGCGGAAAGGTATTGCCAACTCTTATCGGCAACAATGTTACAATTGGTCACGGTGCTGTGCTTCATGGATGTACTGTTGAGGATGAGGCTTTTGTAGGCATGGGTGCAACTCTTCTTGATGGGGTTTTTGTGGAAAAAAATGCTATGGTTGCAGCTGGGTCGCTTGTGAGACAAAATGCCAGAATACCCTCTGGAGAGGTGTGGGCAGGGAATCCTGCAAAATTTTTACGGAAGCTTACCGATGAAGAGATTGAATTCATCTCACAATCGGCTTTAAATTATCAAAGCTTAGCAGAAATGCATGCAAGAGAAAATGCAAAGAGCTATGATGAAATTGAGGCATATAAGGTGCTGCGGAAGAAACTAGCTAGGCAGAGTGATGACTATGATTCTCATTTGGGTGTTGTTAGGGAGTTTCCCCCAGAATTGATTGTTCCAGACCGTGTTATAGAAGGCAAACTTCCAGCAAGAGAACCTTTCTAA___GATTCTGGATCTTCTACCGGGCATGATTTTGTGGAGCATTGTAATAAGTACCTGACATGTTTTCCCAGGTCCGAGTCACCATAGTGTGCCCTTTTTGTATTAACTGTTTGTATCTCCCTCTATCCTGGGGATATCAATAGCCGATCTTGCTGTTTTTTCAAATTATATTTAAACGAATTACTTAATCAATTTGTTTTTGGACGAACATTTGAGTCGTATGGTAAATAAATTTAAAAACATTGTGTCATATGCACACATTGCATTAATAC

Fln Alignment:

sp_v1.1_unigene23776___MGTLGRVIYMAGHLFRETGQAIDRLGCRLQGNYGFQEQLSRHRTLMNIFEKAPSLHRDVFVAPSAAVMGDVKVGQGSSIWYGSVLRGDVNSIVVGSGTNIQDNTLVHVAKTNLSGKVLPTLIGNNVTIGHGAVLHGCTVEDEAFVGMGATLLDGVFVEKNAMVAAGSLVRQNARIPSGEVWAGNPAKFLRKLTDEEIEFISQSALNYQSLAEMHARENAKSYDEIEAYKVLRKKLARQSDDYDSHLGVVREFPPELIVPDRVIEGKLPAREPF
A9NZX3_______________MGTLGKVIYMAGFLIRETGQAIDRFGCRLQGNHGFQEQLSRHRTLMNIFEKAPSLHRDVFVAPSAAVMGDVKVGQGSSIWYGSVLRGDVNSIMVGSGTNIQDNTLVHVAKTNISGKVLPTIIGNKVTIGHGAVLHGCTVEDEAFVGMGATLLDGVVLEKNAMVAAGSLVRQNARIPSGEVWAGNPAKFLRKLTDEEIEFILQSALNYQNLAEMHARENAKSYDEIEAYKVLRKKLARQSDDYDSHLGVVREFPPELVVPDRVIEGKLPAREPY

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
159		50	50		1.0
164	50			50	1.0
165	50		50		1.0
171	50			50	1.0
175		50		50	1.0
178			50	50	1.0
179		50		50	1.0
181		50		50	1.0
453		9		90	1.0
497	7		92		0.999999
507		7		92	0.999999
528	7			89	0.999999
553		8	91		1.0
658	89		3		0.998304
791			12	87	0.992554
836	16		83		0.994512
845	20	80			0.995493
846	20	80			0.995493
847	80	20			0.995493
848		20	80		0.995493
935		85		14	0.993533
1030		66		33	1.0
1235			38	61	1.0
1252	22		77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain