SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23739

Length: 1320 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23739

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Coiled-coil domain-containing protein, putative	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF814	IPR008532	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR02

Fln msg: Separated hits, possible frame ERROR between 890 and 1034, your sequence is longer than subject: 251 - 215

Fln protein: MVLYFKATPEAGDYTIYMGIDKFENEELIRYGIPEDIWFHVDKLSSAHVYLRMHKGQTIDNISQPVLDDCAQLVKANSIQGNKLNNIDIVYTPWSNLRKTSSMDVGQVGFHNPKLVRTIRVEKRINEIVNRLNKTKVERKPDLKAEREAINAAERAQIKAQGRExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAEIRSYKGFMVAEKMTSNKDIASGSKSAQEVEDDFM*

Protein Length: 252

Fln nts: ATGGGGGAACATATTCATCCCTATCTTTCCAGAAATCAATCATATGATCCTGTGGTTTGTCCCCTCCCACCGAAAGGTAAATTCTCCCCGTAATGAGAGCCCCTACGAAATCAACCATCATAATCGGTCGAAGGGTGGGATGCCCATGAGGCCTAACAGTTCCTAAAATACTTTTTGGGTGGTGACAGGAGCCATCTTCTCATCTCCTATATCTTGAGGAATGCTCTGCTCGTTCAACAAACGATTATCTATCGTTTCTCCATATTTCGAGGAGCGGTGAAGGCACTCCGCTTCTGTTCCAGCGTACCCTCAAAATTATCAGCGGGAGGAAAAAAGGCCTTTGATTCAGGCTGCTTGATTGTATCTTGTGGGCAGTTGGGCTATCGGCAGGCAAG_-_ATGGTACTCTATTTCAAGGCCACGCCAGAGGCTGGTGATTACACCATCTACATGGGCATTGATAAGTTCGAAAATGAAGAACTCATCAGATACGGTATTCCTGAGGATATCTGGTTTCACGTGGATAAGCTATCCTCAGCACACGTTTATTTGAGAATGCACAAGGGTCAGACAATAGACAATATTAGTCAACCAGTCTTGGATGATTGTGCACAGCTAGTGAAGGCAAACTCTATTCAAGGAAACAAACTCAATAACATTGACATTGTGTACACCCCTTGGTCAAATTTAAGAAAGACTTCTTCTATGGATGTTGGGCAAGTTGGCTTCCATAACCCCAAGCTTGTTCGAACTATAAGAGTAGAGAAGCGAATCAATGAAATTGTGAATCGCTTGAACAAAACAAAAGTTGAGCGAAAACCTGATTTGAAAGCTGAACGAGAAGCTATAAATGCCGCAGAGAGAGCACAAATAAAAGCTCAAGGGAGGGAAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAAGCAGAAATAAGAAGCTATAAAGGCTTTATGGTTGCAGAAAAAATGACTTCTAACAAGGATATTGCATCTGGTAGCAAGTCCGCTCAAGAAGTCGAGGATGATTTCATGTGA___TGATGCAAGAAGGAAGACACATAAACAGTTTACATGTAGCTTTCTATTATGGTAGTCTGCACATAATATTCTAGATATGTGTCTCCAAGTAATTAGAGATCTGATATAGTTCATATCAATTTTTGAGTGCCATCGACAGGGCATCTATAGTCGTTTCTGCTGGTTGCAATTCT

Fln Alignment:

sp_v1.1_unigene23739___MVLYFKATPEAGDYTIYMGIDKFENEELIRYGIPEDIWFHVDKLSSAHVYLRMHKGQTIDNISQPVLDDCAQLVKANSIQGNKLNNIDIVYTPWSNLRKTSSMDVGQVGFHNPKLVRTIRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXQIKAQGREKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAEIRSYKGFMVAEKMTSNKDIASGSKSAQEVEDDFM
C0PR02_______________MVFYFKATPEVGDYTIYMGIDKFENEELIRYGIPEDVWFHVDKLSSAHVYLRMHKGQTIDNISQPVLDDCAQLVKANSIQGNKINNIDVVYTPWSNLRKTSSMDVGQVGFHNPKLVRTIRVEKRINEIVNRLNKTKVERKPDLKAEREAINAAERAQIKAQGREKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAEIRSYKGFMVAEKMTSNKDIASGSKSAQEIEDDFM

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
258		75		25	0.996473
259		25		75	0.996473
366		11		88	0.923564
383	66			33	1.0
388		33	66		1.0
709			33	66	0.997452
710			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain