SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23717

Length: 995 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23717

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=2 Tax=Picea RepID=Q5W5I2_PICAB	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	peroxidase-like protein	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	81%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	81%
Blast2go	Haem peroxidase	IPR010255	-	81%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9C9

Fln msg: Separated hits, possible frame ERROR between 114 and 125, and overlapping frame ERROR between 589 and 579, your sequence is shorter than subject: 292 - 351

Fln protein: RRDLGCHSFHFHDCFVEGCDGSVLLNATSGEQTARRDxxxxxQAFKIINDIKQNVEAACSGIVSCADILTLAARDSVVMAGGPFYPLPLGRRDSLTFANRSTVLANLPSPTSNVTGLISVLGPKGLNFTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPTMDQSFAKNLYITCPTSTTVNTTKLDIRxxxxxxDNKYYVDLLNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVLTGSKGEIRKNCWASNPSTYSIMDPEASQESTSYSM*

Protein Length: 293

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCACTTCCACGACTGTTTTGTCGAGGGATGCGACGGTTCGGTGTTGTTGAACGCAACGTCAGGTGAGCAGACGGCTCGTCGTGACCTxxxxxxxxxxxxTCAGGCTTTTAAGATTATCAACGATATCAAACAGAACGTCGAAGCCGCCTGCAGCGGAATTGTGTCGTGTGCCGACATTCTTACCTTAGCGGCTCGTGACTCCGTTGTAATGGCTGGAGGACCGTTCTACCCCTTACCACTCGGCCGCAGGGACAGCCTTACCTTCGCCAATCGATCGACCGTTCTTGCCAATTTGCCATCCCCAACCTCCAATGTAACAGGGCTTATCAGTGTTTTGGGTCCCAAAGGCTTGAATTTCACAGATCTGGTGGCCCTCTCAGGAGGACATACAATTGGCAGAAGCAACTGCTCCTCCTTCGACAACAGACTATATAACAGCACCACCGGTACACAAATGCGGGATCCCACGATGGACCAGAGTTTCGCTAAGAATCTTTATATCACCTGCCCTACCAGTACCACCGTTAACACCACCAAATTGGATATTCGCAxxxxxxxxxxxxxxxCTGACAACAAATACTACGTCGATCTCCTCAACCGACAGACCCTCTTCACTTCTGACCAGACTCTTTACACCGACACTCGAACCCGCGACACTGTCATCAACTTTGCGGTGAATCAGACCCTCTTCTTTGAACAGTTTGTGCTCAGCATGCTCAAAATGGGTCAGCTGGATGTTCTCACGGGAAGCAAGGGAGAGATCCGTAAGAACTGCTGGGCGTCTAATCCTTCAACATACTCCATTATGGATCCAGAGGCCTCTCAAGAATCGACCTCTTACTCCATGTGAGACTAGGGTTATCAGCGAATCTCAAATATAAGCAAGCAGCCTTAATTCCCAGCAAAGTCTAATAAATATATATATATATAACCGGCAGCTTGTAAACCCTTTGCGCTGCTTGTTCTACAAATT

Fln Alignment:

sp_v1.1_unigene23717___GCHSFHFHDCFVEGCDGSVLLNATSGEQTARRDLxxxxQAFKIINDIKQNVEAACSGIVSCADILTLAARDSVVMAGGPFYPLPLGRRDSLTFANRSTVLANLPSPTSNVTGLISVLGPKGLNFTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPTMDQSFAKNLYITCPTSTTVNTTKLDIRTxxxxDNKYYVDLLNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVLTGSKGEIRKNCWASNPSTYSIMDPEASQESTSYSM
D5A9C9_______________GLLRLHFHDCFVQGCDGSVLLNSTSGEQTTPPNLxxxxQAFKIINDIKENVEAACSGIVSCADILALTARDSVVMAGGPFYPIPFGRRDSLTFANLSTTLANLPSPASNVTVLISVLGPKGLTFTDLVALSGGHTIGRSNCSSFQNRLYNTTTGISMQDSTLDQSFAKNLYLTCPTNTTVNTTNLDIRTxxxxDNKYYVDLLKEQTLFTSDQSLYTDTRTRDIVKSFALNQSLFFQQFVLSMLKMGQLDVLTGSEGEIRNNCWAANPSTYSIIDPEASQESSSYSM

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
178		66		33	0.997452
179	66		33		0.997452
180			66	33	0.997452
186	66	33			0.997452
187		33		66	0.997452
192			33	66	0.997452
199	33		66		0.997452
203	33		66		0.997452
507		20	80		0.995493
509	80			20	0.995493
511		80	20		0.995493
512	80			20	0.995493
515		20	80		0.995493
516		20		80	0.995493
519		80	20		0.995493
523	80		20		0.995493
524	80			20	0.995493
525		20	80		0.995493
527	80	20			0.995493
530	20			80	0.995493
626		80	20		0.995493
628		80	20		0.995493
630	80	20			0.995493
632		80		20	0.995493
634	80		20		0.995493
636	80			20	0.995493
638	80			20	0.995493
640	16	83			0.994512
641		83	16		0.994512
644	16		16	66	0.988813
646		83	16		0.994512
654	83			16	0.994512
658		16	83		0.994512
659	83			16	0.994512
904		66		33	0.997452
907	66		33		0.997452
908	66	33			0.997452
913	66		33		0.997452
918	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
938	952	AT AT AT AT AT AT AT A	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain