SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23700

Length: 2583 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23700
CGTCGTGACCTTGGCTGTCACTCAGACTTTCCACCATAAGCGTTTCGGATTTTTGTCTGGTGAGTTGGCTTTTTCTCAAATTTCCCTGGGTTCGTCTGGATTGAGTGCTTTTGAAGTCAATTTCACATCACAATGTATATCGGCTGCAAAATGCTGAAGTCTTAGCAATGGTGAGATGTTGACTCATCATCACAGTGTCAAGCTATTGGCCTCCTGGCTACCGGATCAATAAAAAATGAGATTTGATCTCAGATGGGTTTCGTGAAAAAACAGGATTGCTGCTCGAGTGTTCGATCCCGTCCATGTCCAAGGGTTGGAGCAAGATTTTAAAACCGCGTCAGACCAAGCATAATCATTCAGTCTTAGACAGAGCCTTTCAAATTTGAAGGAAGCTGTTAGATAGGAGACAGTTGCATTATGGCATGTTTAGCAATTGCTTTGCAGCCTACAAAGGGGTCTGATATTCTTCTTCAAACCCGAGAATGGTTTCCTCCTGCAAGAGCGTTGGTAGCTCTCTCCAGTTTTAGAACCACTCGTCTGGCTTTTGCAAGTGGAAAAATTAGTACATCTGATGATGTTGATCAAGGACTTGGTGATGATCCTTTGGCAGCTTCAAGTGGACAAGTAATTGTTGGAAAGGAAAGCAAATATCGGGTAGTATACCGTTTGGTGAATAGCATTTACGTTCTTGGTATTACAAGNGCAGATCAGGATGTTAATGTAAACAATGTTTTTGAATGTACTGGAATTGTAAATCAAGCAGTAAGTGTAGTTGTAGCAGCTTGTAGAGGGGTTGATGTTACTCCTGACAAGCTTCATCGCAAGTATACAGAGATTTACATGGCTTTAGATATTGTTTTGCGTGGGGCGAGCAGCACAAGGCTTGCCACTATTTTGACATCCATACATGGGGAAGGTATTGCAAAAATGGTTCTTTCTGCTATTGATGCAGAGAATCGTGCACGTGGTGCAGATAACTGGATTCATGTAGAAGGGCAGTCTATTGAGCATCAGGCAAATGTACAAGTTCTTTCGCAGGCTTCTTTTGAGCTGCCAGAAGAGACCTTATCTGCTGGGGATGAGGTGGCGGCAACTATTGCTCCTGCCCCACAGAGCACTGCATCTCAGGCTTCACAACAGCAGTCAGTGGAAAAACCAGAAAATAAAGACCCATTTGCTGTTAGCGATACTCTGAATAAGCCAGATGAACTTGCTGGTGGATTTAAGAAGAACAATGCATCGTCCTCTGATGTCACAGCTGCCCTTGCTGAGTTGGAGGTTACAAAACTGACAACAAATGCGACAGCAGAGTCCATGTTCATTGGAGTGGAGGGTTTTGAAGGAGAATATGGAGGAGTTGAGTTTGGGAACGAGGAGGCAACATTATCTGAGACATTTGAAGGGCTAGATAACGCCTTTGGTGGAGGTTTAGATCCATCTGAATTTGGAGCAACTATTGAGCAAGCTAAACCCAAAGGGCTTGGAGGCCTTGAAGAGCTGGAGAGTGGACAGTCAACATTGAAACCATCACTGCCAGGGGCAACTCCACCCGGTGTAACTCTGGCCATAGGGAACGCTTCTGAAAACAAAGGTCCCTTATTATACATGTCTGAGGAGATCCATGCTGAGTTTAGAGGGTCGGTACTTAAAAAGATTGGACTTCAGGGTACATTGTATTTGAAAACTACTTCCCCAAAAGATTCTGGTGGTAAGGATACTGAATTTTCATTTAGGCTCGATGGTACAGCTGGCATCAGGAGTGCTATCATGAAAGATGCAATTGTTAGTACTCTAGGAAAGGGTTTGTTTCATGTTCGAACTCCAGCATCAGAGAATCCTATTACAGTTTTGAAATATCGTCTTCAACCCCGTTTTACTCCATTGCCTTTGAGGGTTCGTTTGGTCACGCGTCAAAGTGGGACCTTGCTTTCAATAATGATACAGTATGTAGCCAATCCATTTTTACCCGCACCTCTTAAAGATGTGGCTTTTATTTTGACATTACCAGAGGATCCTACTTTATTGAAAGTGTCTCCAAAGGCTACTTTGAACCGGCATAGTCAAGAATTAAGATGGCATATTCCGGAGATCCAATTACAAGGTCGTCCTGGACGTTTAAGAGTTCAGATGCCAGTCAGCTCTCCAACTCGGGATTCCGCAGATCGGGCTTCTCACAGGAAAGAACCGAATGTAAAAGGTCGCATAGAATTCTCTGTTCAGGGACACACACTTTCGGGAATCACTGTCTGTCCTATTTCTGAAGGGAATTCCGACTTTAATACAGGTGAAAATAGCTGCAAAACAGGTCTCTATCTCTGTAAAGCATAAGAGCGAATGTTGAAAAAAGGATAATGTTATTTTTGTTGTTTTATTTGTAAATCTTTATGAGTTAAAGGTTGTGGGATTTTGAAGAATTGGAAGTCACATGTCAATAATCTGGGTTTAAATGGGTTTTCTGGATTTTCTTGCATTTGTTTTTCTGTGCTAAAATACTGGAGTTGTCCATTTCATCATTCTACATATCCTATTTGTTTGGACACATCGCTACTATATATTGTAAGGTTCGGTTTTCAAGGCCGTTTT

Ace file of the UniGene sp_v1.1_unigene23700

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Adap_comp_sub domain containing protein	-	-	1.0e-05	20%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GXG7

Fln msg:

Fln protein: MACLAIALQPTKGSDILLQTREWFPPARALVALSSFRTTRLAFASGKISTSDDVDQGLGDDPLAASSGQVIVGKESKYRVVYRLVNSIYVLGITRADQDVNVNNVFECTGIVNQAVSVVVAACRGVDVTPDKLHRKYTEIYMALDIVLRGASSTRLATILTSIHGEGIAKMVLSAIDAENRARGADNWIHVEGQSIEHQANVQVLSQASFELPEETLSAGDEVAATIAPAPQSTASQASQQQSVEKPENKDPFAVSDTLNKPDELAGGFKKNNASSSDVTAALAELEVTKLTTNATAESMFIGVEGFEGEYGGVEFGNEEATLSETFEGLDNAFGGGLDPSEFGATIEQAKPKGLGGLEELESGQSTLKPSLPGATPPGVTLAIGNASENKGPLLYMSEEIHAEFRGSVLKKIGLQGTLYLKTTSPKDSGGKDTEFSFRLDGTAGIRSAIMKDAIVSTLGKGLFHVRTPASENPITVLKYRLQPRFTPLPLRVRLVTRQSGTLLSIMIQYVANPFLPAPLKDVAFILTLPEDPTLLKVSPKATLNRHSQELRWHIPEIQLQGRPGRLRVQMPVSSPTRDSADRASHRKEPNVKGRIEFSVQGHTLSGITVCPISEGNSDFNTGENSCKTGLYLCKA*

Protein Length: 638

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACTTTCCACCATAAGCGTTTCGGATTTTTGTCTGGTGAGTTGGCTTTTTCTCAAATTTCCCTGGGTTCGTCTGGATTGAGTGCTTTTGAAGTCAATTTCACATCACAATGTATATCGGCTGCAAAATGCTGAAGTCTTAGCAATGGTGAGATGTTGACTCATCATCACAGTGTCAAGCTATTGGCCTCCTGGCTACCGGATCAATAAAAAATGAGATTTGATCTCAGATGGGTTTCGTGAAAAAACAGGATTGCTGCTCGAGTGTTCGATCCCGTCCATGTCCAAGGGTTGGAGCAAGATTTTAAAACCGCGTCAGACCAAGCATAATCATTCAGTCTTAGACAGAGCCTTTCAAATTTGAAGGAAGCTGTTAGATAGGAGACAGTTGCATT_-_ATGGCATGTTTAGCAATTGCTTTGCAGCCTACAAAGGGGTCTGATATTCTTCTTCAAACCCGAGAATGGTTTCCTCCTGCAAGAGCGTTGGTAGCTCTCTCCAGTTTTAGAACCACTCGTCTGGCTTTTGCAAGTGGAAAAATTAGTACATCTGATGATGTTGATCAAGGACTTGGTGATGATCCTTTGGCAGCTTCAAGTGGACAAGTAATTGTTGGAAAGGAAAGCAAATATCGGGTAGTATACCGTTTGGTGAATAGCATTTACGTTCTTGGTATTACAAGaGCAGATCAGGATGTTAATGTAAACAATGTTTTTGAATGTACTGGAATTGTAAATCAAGCAGTAAGTGTAGTTGTAGCAGCTTGTAGAGGGGTTGATGTTACTCCTGACAAGCTTCATCGCAAGTATACAGAGATTTACATGGCTTTAGATATTGTTTTGCGTGGGGCGAGCAGCACAAGGCTTGCCACTATTTTGACATCCATACATGGGGAAGGTATTGCAAAAATGGTTCTTTCTGCTATTGATGCAGAGAATCGTGCACGTGGTGCAGATAACTGGATTCATGTAGAAGGGCAGTCTATTGAGCATCAGGCAAATGTACAAGTTCTTTCGCAGGCTTCTTTTGAGCTGCCAGAAGAGACCTTATCTGCTGGGGATGAGGTGGCGGCAACTATTGCTCCTGCCCCACAGAGCACTGCATCTCAGGCTTCACAACAGCAGTCAGTGGAAAAACCAGAAAATAAAGACCCATTTGCTGTTAGCGATACTCTGAATAAGCCAGATGAACTTGCTGGTGGATTTAAGAAGAACAATGCATCGTCCTCTGATGTCACAGCTGCCCTTGCTGAGTTGGAGGTTACAAAACTGACAACAAATGCGACAGCAGAGTCCATGTTCATTGGAGTGGAGGGTTTTGAAGGAGAATATGGAGGAGTTGAGTTTGGGAACGAGGAGGCAACATTATCTGAGACATTTGAAGGGCTAGATAACGCCTTTGGTGGAGGTTTAGATCCATCTGAATTTGGAGCAACTATTGAGCAAGCTAAACCCAAAGGGCTTGGAGGCCTTGAAGAGCTGGAGAGTGGACAGTCAACATTGAAACCATCACTGCCAGGGGCAACTCCACCCGGTGTAACTCTGGCCATAGGGAACGCTTCTGAAAACAAAGGTCCCTTATTATACATGTCTGAGGAGATCCATGCTGAGTTTAGAGGGTCGGTACTTAAAAAGATTGGACTTCAGGGTACATTGTATTTGAAAACTACTTCCCCAAAAGATTCTGGTGGTAAGGATACTGAATTTTCATTTAGGCTCGATGGTACAGCTGGCATCAGGAGTGCTATCATGAAAGATGCAATTGTTAGTACTCTAGGAAAGGGTTTGTTTCATGTTCGAACTCCAGCATCAGAGAATCCTATTACAGTTTTGAAATATCGTCTTCAACCCCGTTTTACTCCATTGCCTTTGAGGGTTCGTTTGGTCACGCGTCAAAGTGGGACCTTGCTTTCAATAATGATACAGTATGTAGCCAATCCATTTTTACCCGCACCTCTTAAAGATGTGGCTTTTATTTTGACATTACCAGAGGATCCTACTTTATTGAAAGTGTCTCCAAAGGCTACTTTGAACCGGCATAGTCAAGAATTAAGATGGCATATTCCGGAGATCCAATTACAAGGTCGTCCTGGACGTTTAAGAGTTCAGATGCCAGTCAGCTCTCCAACTCGGGATTCCGCAGATCGGGCTTCTCACAGGAAAGAACCGAATGTAAAAGGTCGCATAGAATTCTCTGTTCAGGGACACACACTTTCGGGAATCACTGTCTGTCCTATTTCTGAAGGGAATTCCGACTTTAATACAGGTGAAAATAGCTGCAAAACAGGTCTCTATCTCTGTAAAGCATAA___GAGCGAATGTTGAAAAAAGGATAATGTTATTTTTGTTGTTTTATTTGTAAATCTTTATGAGTTAAAGGTTGTGGGATTTTGAAGAATTGGAAGTCACATGTCAATAATCTGGGTTTAAATGGGTTTTCTGGATTTTCTTGCATTTGTTTTTCTGTGCTAAAATACTGGAGTTGTCCATTTCATCATTCTACATATCCTATTTGTTTGGACACATCGCTACTATATATTGTAAGGTTCGGTTTTCAAGGCCGTTTT

Fln Alignment:

sp_v1.1_unigene23700___MACLAIALQPTKGSDILLQTREWFPPARALVALSSFRTTRLAFASGKISTSDDVDQGLGDDPLAASSGQVIVGKESKYRVVYRLVNSIYVLGITRADQDVNVNNVFECTGIVNQAVSVVVAACRGVDVTPDKLHRKYTEIYMALDIVLRGASSTRLATILTSIHGEGIAKMVLSAIDAENRARGADNWIHVEGQSIEHQANVQVLSQASFELPEETLSAGDEVAATIXXXXXXXXXXXXXXXXVEKPENKDPFAVSDTLNKPDELAGGFKKN--NASSSDVTAALAELEVTKLTTNATAESMFIXXXXXXXXXXXXXXXXXXATLSETFEGLDNAFGGGLDPSEFGATIEQAKPKXXXXXXXXXSGQSTLKPSLPGATPPGVTLAIGNASENKGPLLYMSEEIHAEFRGSVLKKIGLQGTLYLKTTSPKDSGGKDTEFSFRLDGTAGIRSAIMKDAIVSTLGKGLFHVRTPASENPITVLKYRLQPRFTPLPLRVRLVTRQSGTLLSIMIQYVANPFLPAPLKDVAFILTLPEDPTLLKVSPKATLNRHSQELRWHIPEIQLQGRPGRLRVQMPVSSPTRDSADRASHRKEPNVKGRIEFSVQG-HTLSGITVCPISE
F6GXG7_______________MSCLALSLQPANGPDILLQTREWFPPARALVALSAFRQTRQAFAAGKHQSAEDGDSSLGDDPLAASSGQLIVGVESRYRVVYRLVNGIYVLGITTVDYDLGVNNVFECIGIVNQAVSVVVAACRGVDVTPDKLNRKYAEIYMALDIVLRGVSSIRLAAMLASMHSDSIAKMVHSAIDTESKIRGAENWSNVEINSVEHLASVDAFSNTRFELPADVLAAGDEVVASIVPVQSVAEQQDQPEKKAEEEVEKDPFAASDALTKPESLVGDFKKNKDQAAVSDLTVALAGLEVTTLPPAAATDSTHIGVEGFEGNYGGIEFGNEEASLGETFEGFNDAFGGGLDASEFVGPKKVPKSQGLGGLELLQTG----TPAASGAATPLEDLLV-KKSEMKGPEMYIGEVISVEFRESLLARVGLMGVVYLKTLPPKTS-DKETEFSFRIDGTSGVKRFVMQSSRVSSLGNGMFHVRTAPSEEPIPILKYSLLPRLTPLPLRVRLIKRHSGTLLSVMIQYVSNPDLPAPLTDVTFVLKLPVDPSLLKVSPKAVLNRSERELRWHVPEIPQKGAPGRLRVRMPVDSNEEDGGE------EIEVVGYVKFSAQGMRSLSGVSLRPASE

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
61		50	50		1.0
63		50		50	1.0
67		50	50		1.0
68	50			50	1.0
69	50			50	1.0
74			50	50	1.0
76		50		50	1.0
77	50			50	1.0
80	50	50			1.0
147			88	11	0.923564
154	88	11			0.923564
155	88			11	0.923564
156	88			11	0.923564
157			11	88	0.923564
162	88	11			0.923564
164		11	88		0.923564
168	11			88	0.923564
705	75			25	0.996473
708		50		50	1.0
810		16		83	0.994512
837	85		14		0.993533
838			85	14	0.993533
839	85	14			0.993533
843			14	85	0.993533
844	14			85	0.993533
845	85	14			0.993533
847	71		14	14	0.984337
853			14	85	0.993533
855		14		14	0.984337
857		14	85		0.993533
858	71		14	14	0.984337
859		14		85	0.993533
862	22	22		44	1.0
865		25		75	1.0
866			25	75	1.0
871		25	62		1.0
873			75	25	1.0
876		25	75		1.0
877		75		25	1.0
879	75			25	1.0
883		25	75		1.0
991	88			11	0.923564
1022		88	11		0.923564
1040		88		11	0.923564
1076	10			90	0.90298
1078	90		10		0.90298
1079			10	90	0.90298
1080		90	10		0.90298
1209	75			25	0.996473
1600	80		20		0.995493
1615		85		14	0.993533
1725	80		20		0.995493
1891	90		10		0.90298
1894		10	90		0.90298
1895		90	10		0.90298
1897	10			90	0.90298
1898			10	90	0.90298
1903			88	11	0.923564
1905	11			88	0.923564
1906		11		88	0.923564
1907	11	88			0.923564
1909			11	88	0.923564
1910		11		88	0.923564
1911		11		88	0.923564
2107	83		16		1.0
2197	87		12		0.992554
2211	25		75		1.0
2224		14		85	0.993533
2233	80		20		0.995493
2493	33	66			0.997452
2494		33		66	0.997452
2496			33	66	0.997452
2582		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain