SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23693

Length: 2735 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23693
CGTCGTGACCTTGGCTGTCACTCAGTTGCTACCTGAGGACTCTCCGTGCCCATCTCTTCATCACTTGGAGTGGCCTCTTGTTTAAATGCTAAGCTGCTTTTCGTTTTGATTGATCATAGAGCTTGTCAGGGGGTGCTTTTCATGGATTTCTTAGAGTTGATCATGGTTTTGATGGGTTATTAAGTGTTTCGGATTTTCAGATGAAGGGTTTTGGAGGGTTTTGGAGGATGAGTTTCTGATTGTATCTTAAGAGGGTTTTGTGATTTGAAGTATATAAAGATTAAGAGGGGGAAGGGGGATAGGGGGAAGTGGGATCCGAGTTTAAGTGGTTAGCAATGGAGGCAGCAGTTGGAGCCAGTGGGGTCATTCCCAGTGTATATGTCTCGCCTGCACGCAGAGCTGCAAGTTCTCGGATCTCTGGTAAGGTTGCATTTAGATTGAGTAATGGGCTTTTCCGGGGGAAATCTGAGGTTTTGGCTGTTGAAAGGAAGAAAACAGATAAATCTGGCATATTGGGTGGTTCCCTGAGTGAAGCGGCTAACCAGAGCAGACAATTGTTTGCTCCTGAACTTCAAAATGGTACCCTCGTCAACAGAAGGTCTCGGCACATATGCAGGGCTTCTCAGGCCATTGCTGCTGATGCGGGTGGTAGTGATGCGCAGGAGTTTGTGCCTGCCCCGAAGAAATTCATGGGAGTTGAGCCAATCACACTGAAGAAGGTGATCCCTCTTGGAATGATGTTCTTCTGCATTCTTTTCAACTACACGATTCTGAGAGACACCAAGGATGTGCTGGTGGTGACTGCCAAGGGAAGCAGTGCTGAGATCATTCCATTTCTCAAGACATGGGTTAATTTGCCAATGGCCATTGGGTTCATGATTATTTACACCAAGCTTTCAAATGTTTTATCAAAAAAGGCTCTTTTCTATTCCTGTATATTGCCCTTCATTGCCTTCTTTGGGGCATTTGCTTTCGTGCTGTACCCACTAAATAATCTCATCCACCCCACAGCATTGGCAGATTCCTTGCTAAAATTTCTAGGGCCTAGCTTTCTAGGTCCCATTGCCATTCTTCGGATATGGTCTTTCTGTTTATTCTATGTCATGGCAGAACTTTGGGGCAGCGTGGTGGTATCGGTGCTGTTTTGGGGATTCGCCAATCAGATTACAACAGTGGATGAAGCAAAGCAGTTCTACCCTCTGTTTGGCCTTGGAGCCAATATAGCCTTGGTTTTTTCAGGGCGAACTGTTAAGTATTTCTCCAATATGCGTAAGAATCTGGGGCCTGGCGTGGACGGTTGGGCAATGTCCTTGAAGGCAATGATGAGCATAGTGGTGGCGTTGGGGCTTTTCATATGTGCAATCTACTGGTGGGTAAATAAATATGTAGTGGATGATCCTACACTTCCCAAGGGAGAAGTTCGTAAGAAGAAGGAGAAACCAAAGATGGGAATGTTGGAGAGTTTTAAGTTCCTATTGACTTCAAGATATGTGAGAGACCTTGCCACTTTGGTGGTTGCATACGGTATTAGCATCAACCTTGTTGAAGTCACCTGGAAGTCAAAACTGAAGGCACAGTATCCAAGTCCAAATGAATATTCCGCATTCATGGGAGATTTCTCCACAATGACAGGAATTGCTACCTTCACCATGATGTTGCTAAGCAGAGTTATATTCCGCAAATATGGTTGGGGAGTAGCCGCTACCATTACACCTACTGTGTTGCTGGCAACAGGAGTAGCTTTCTTTGGTCTCATTCTCTGCAGTGAACCGCTCACTCCCCTATTGGGTAAATTTGGCATGACACCGCTTTTGGCAGCTGTGTATGTTGGAGCTCTTCAGAACATCTTTAGCAAGAGTGCTAAATATAGTTTGTTTGATCCTTGCAAGGAGATGGCTTACATTCCTCTTGATGAAGACACCAAGGTTAAAGGAAAGGCTGCAATAGATGTGGTCTGCAATCCCTTGGGAAAGTCAGGAGGTGCACTGATTCAACAATTTCTGATTTTAACCTTTGGTTCACTCGCCAACTCCACTCCCTACCTTGGGGGCATCTTGTTGGTTATAGTGGTGGCCTGGTTAGCAGCTGCACGATCATTGGACAGTCAGTTCACTCCATTGGTGAAGAAAGACCTTAAGAGCAAATATCTGGAGGGTAAGCTGTCTGCAGCAACGTCCAAAGTGACAGGTTCCCTCAGAGGAAAGCAGGAGGTGTCCTATAGATTTATGAGTCGTCTCAATAGTAAGGGATTCATAGAAGGTAAGTATGAACCCTTTGTGGAAGGTAGTGCCCCTTCAATTGACGAACAGCCGCAGCAACAACAGCAGGGGGAGGACGTTCTCAAAGTGTCTAGGTTACAGCCAAAACCTATCCAATCAGCTCCAGTAGAGGAGGTCCATGACAAACTTGTAGTTGCAGAGGAAGAAATAGAAACAAAAATATCACCGTCGTCTTCCCTTGGAAATGGAAGCTTTCAAGGACCAAGAGGAAGTGATGATGACAACTCAAATGGGTCTCCAATCAAGGACTCGGAGACTTCAGAGTCTGATTCGTCCAGTCCAGTGGCCTAGATGGATGGCTGACTCTGTTTGACGAATAGACGGATTTCATTTCAATATTCTTAGAATTTAGTTTCATATTAGATTTTGGGAATTTTGAAGATGGAAACAGATGGTGCATTAGCTGCACCCTTTTATTTTAACATTGACCAGGCTACATTAGCTCTATGGCTAAGG

Ace file of the UniGene sp_v1.1_unigene23693

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NTT1; NTT1 (NUCLEOTIDE TRANSPORTER 1); ATP:ADP antiporter	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	plastidic atp adp transporter	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A865

Fln msg: your sequence is longer than subject: 745 - 416

Fln protein: MEAAVGASGVIPSVYVSPARRAASSRISGKVAFRLSNGLFRGKSEVLAVERKKTDKSGILGGSLSEAANQSRQLFAPELQNGTLVNRRSRHICRASQAIAADAGGSDAQEFVPAPKKFMGVEPITLKKVIPLGMMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMIIYTKLSNVLSKKALFYSCILPFIAFFGAFAFVLYPLNNLIHPTALADSLLKFLGPSFLGPIAILRIWSFCLFYVMAELWGSVVVSVLFWGFANQITTVDEAKQFYPLFGLGANIALVFSGRTVKYFSNMRKNLGPGVDGWAMSLKAMMSIVVALGLFICAIYWWVNKYVVDDPTLPKGEVRKKKEKPKMGMLESFKFLLTSRYVRDLATLVVAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTMTGIATFTMMLLSRVIFRKYGWGVAATITPTVLLATGVAFFGLILCSEPLTPLLGKFGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFLILTFGSLANSTPYLGGILLVIVVAWLAAARSLDSQFTPLVKKDLKSKYLEGKLSAATSKVTGSLRGKQEVSYRFMSRLNSKGFIEGKYEPFVEGSAPSIDEQPQQQQQGEDVLKVSRLQPKPIQSAPVEEVHDKLVVAEEEIETKISPSSSLGNGSFQGPRGSDDDNSNGSPIKDSETSESDSSSPVA*

Protein Length: 746

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGCTACCTGAGGACTCTCCGTGCCCATCTCTTCATCACTTGGAGTGGCCTCTTGTTTAAATGCTAAGCTGCTTTTCGTTTTGATTGATCATAGAGCTTGTCAGGGGGTGCTTTTCATGGATTTCTTAGAGTTGATCATGGTTTTGATGGGTTATTAAGTGTTTCGGATTTTCAGATGAAGGGTTTTGGAGGGTTTTGGAGGATGAGTTTCTGATTGTATCTTAAGAGGGTTTTGTGATTTGAAGTATATAAAGATTAAGAGGGGGAAGGGGGATAGGGGGAAGTGGGATCCGAGTTTAAGTGGTTAGCA_-_ATGGAGGCAGCAGTTGGAGCCAGTGGGGTCATTCCCAGTGTATATGTCTCGCCTGCACGCAGAGCTGCAAGTTCTCGGATCTCTGGTAAGGTTGCATTTAGATTGAGTAATGGGCTTTTCCGGGGGAAATCTGAGGTTTTGGCTGTTGAAAGGAAGAAAACAGATAAATCTGGCATATTGGGTGGTTCCCTGAGTGAAGCGGCTAACCAGAGCAGACAATTGTTTGCTCCTGAACTTCAAAATGGTACCCTCGTCAACAGAAGGTCTCGGCACATATGCAGGGCTTCTCAGGCCATTGCTGCTGATGCGGGTGGTAGTGATGCGCAGGAGTTTGTGCCTGCCCCGAAGAAATTCATGGGAGTTGAGCCAATCACACTGAAGAAGGTGATCCCTCTTGGAATGATGTTCTTCTGCATTCTTTTCAACTACACGATTCTGAGAGACACCAAGGATGTGCTGGTGGTGACTGCCAAGGGAAGCAGTGCTGAGATCATTCCATTTCTCAAGACATGGGTTAATTTGCCAATGGCCATTGGGTTCATGATTATTTACACCAAGCTTTCAAATGTTTTATCAAAAAAGGCTCTTTTCTATTCCTGTATATTGCCCTTCATTGCCTTCTTTGGGGCATTTGCTTTCGTGCTGTACCCACTAAATAATCTCATCCACCCCACAGCATTGGCAGATTCCTTGCTAAAATTTCTAGGGCCTAGCTTTCTAGGTCCCATTGCCATTCTTCGGATATGGTCTTTCTGTTTATTCTATGTCATGGCAGAACTTTGGGGCAGCGTGGTGGTATCGGTGCTGTTTTGGGGATTCGCCAATCAGATTACAACAGTGGATGAAGCAAAGCAGTTCTACCCTCTGTTTGGCCTTGGAGCCAATATAGCCTTGGTTTTTTCAGGGCGAACTGTTAAGTATTTCTCCAATATGCGTAAGAATCTGGGGCCTGGCGTGGACGGTTGGGCAATGTCCTTGAAGGCAATGATGAGCATAGTGGTGGCGTTGGGGCTTTTCATATGTGCAATCTACTGGTGGGTAAATAAATATGTAGTGGATGATCCTACACTTCCCAAGGGAGAAGTTCGTAAGAAGAAGGAGAAACCAAAGATGGGAATGTTGGAGAGTTTTAAGTTCCTATTGACTTCAAGATATGTGAGAGACCTTGCCACTTTGGTGGTTGCATACGGTATTAGCATCAACCTTGTTGAAGTCACCTGGAAGTCAAAACTGAAGGCACAGTATCCAAGTCCAAATGAATATTCCGCATTCATGGGAGATTTCTCCACAATGACAGGAATTGCTACCTTCACCATGATGTTGCTAAGCAGAGTTATATTCCGCAAATATGGTTGGGGAGTAGCCGCTACCATTACACCTACTGTGTTGCTGGCAACAGGAGTAGCTTTCTTTGGTCTCATTCTCTGCAGTGAACCGCTCACTCCCCTATTGGGTAAATTTGGCATGACACCGCTTTTGGCAGCTGTGTATGTTGGAGCTCTTCAGAACATCTTTAGCAAGAGTGCTAAATATAGTTTGTTTGATCCTTGCAAGGAGATGGCTTACATTCCTCTTGATGAAGACACCAAGGTTAAAGGAAAGGCTGCAATAGATGTGGTCTGCAATCCCTTGGGAAAGTCAGGAGGTGCACTGATTCAACAATTTCTGATTTTAACCTTTGGTTCACTCGCCAACTCCACTCCCTACCTTGGGGGCATCTTGTTGGTTATAGTGGTGGCCTGGTTAGCAGCTGCACGATCATTGGACAGTCAGTTCACTCCATTGGTGAAGAAAGACCTTAAGAGCAAATATCTGGAGGGTAAGCTGTCTGCAGCAACGTCCAAAGTGACAGGTTCCCTCAGAGGAAAGCAGGAGGTGTCCTATAGATTTATGAGTCGTCTCAATAGTAAGGGATTCATAGAAGGTAAGTATGAACCCTTTGTGGAAGGTAGTGCCCCTTCAATTGACGAACAGCCGCAGCAACAACAGCAGGGGGAGGACGTTCTCAAAGTGTCTAGGTTACAGCCAAAACCTATCCAATCAGCTCCAGTAGAGGAGGTCCATGACAAACTTGTAGTTGCAGAGGAAGAAATAGAAACAAAAATATCACCGTCGTCTTCCCTTGGAAATGGAAGCTTTCAAGGACCAAGAGGAAGTGATGATGACAACTCAAATGGGTCTCCAATCAAGGACTCGGAGACTTCAGAGTCTGATTCGTCCAGTCCAGTGGCCTAG___ATGGATGGCTGACTCTGTTTGACGAATAGACGGATTTCATTTCAATATTCTTAGAATTTAGTTTCATATTAGATTTTGGGAATTTTGAAGATGGAAACAGATGGTGCATTAGCTGCACCCTTTTATTTTAACATTGACCAGGCTACATTAGCTCTATGGCTAAGG

Fln Alignment:

sp_v1.1_unigene23693___MMSIVVALGLFICAIYWWVNKYVVDDPTXXXXXXXXXXXXXXXXXXESFKFLLTSRYVRDLATLVVAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTMTGIATFTMMLLSRVIFRKYGWGVAATITPTVLLATGVAFFGLILCSEPLTPLLGKFGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFLILTFGSLANSTPYXXXXXXXXXXXXXXXXRSLDSQFTPLVKKDLKSKYLEGKLSAATSKVTGSLRGKQEVSYRFMSRLNSKGFIEGKYEPFVEGSAPSIDEXXXXXXXGEDVLKVSRLQPKPIQSAPVEEVHDKLVVAEEEIETKISPSSSLGNGSFQGPRGSDDDNSNGSPIKXXXXXXXXXXXPVA
D5A865_______________MMTIVVLLGLAICGIYWWVNRYVVDDPTLPKAEARKKKEKPKMGMMESFKFLLTSRYVRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGIATFTMMLLSRVIFRKYGWGVAATITPTVLLATGVAFFGLILCSDPLTPLLGKFGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFLILTFGSLANSTPYLGSILLVIVVAWLAAARSLDSQFTPLVKKDLKSKYLEGKLSAATSKLTGSLKGKQEVAYRFMSGLNSEGFIEGKYVPIVEGISTSNNEQQRQQQQGEEVVKVDRLQPKPIQSAPEEEVHDKLVAAEEEIETKTSPSSSHGNGSIQGPRGSIDDNSNGSPIKNSETSESDSSSPVA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
43			16	83	0.994512
44		83		16	0.994512
49	16	83			0.994512
52	83			16	0.994512
54		83	16		0.994512
55			16	83	0.994512
57		14		85	0.993533
61	85		14		0.993533
63		85	14		0.993533
65	85	14			0.993533
72		14	85		0.993533
75			85	14	0.993533
80	14			85	0.993533
329			66	33	0.997452
1286	20		70		0.999998
1287			88	11	0.923564
1290		88	11		0.923564
1301		11		88	0.923564
1355		12		87	0.992554
1619	76		23		1.0
2408	5	94			0.9982
2462		70		29	1.0
2491	3		96		0.999934

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain