SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23688

Length: 1708 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene23688 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SDG910; SET domain protein; K11430 enhancer of zeste [EC:2.1.1.43]	-	-	70%
FL-Next	sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	polycomb protein ez1	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	70%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Lysine degradation	00310		0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SET domain	IPR001214	-	0.0	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P93831

Fln msg: your sequence is shorter than subject: 421 - 902

Fln protein: STVKEDNNAEDMELQDDTKPDIQGVATEKEEDGESCRKDSMVVTCAKQDDSGWSAIEKGLYAKGVEIFGKNSCFIARNLLNGLKTCSEIAEYIHRNESSMQWAAGDGPNSRSDGNGKADRSDSMGTEARTRTRFWRRRGRVRRLKYTWKSAGHPSIKKRIADSKDQPCRQFTPCDCQSMCGKQCPCLRSGTCCEKYCGCSKGCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVGCGDGSLGGPPQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNPVNKHDYLGEYTGELISHREADKRGKIYDREDSSFLFNLNDQYVLDAYRKGDKLKFANHSPTPNCYAKVIMVAGDHRVGIFAKERIAAGEELFYDYRYEPDRAPAWARKPEGLNPKRDEISTSHRRAQKVA*

Protein Length: 422

Fln nts: TTCAACTGTCAAAGAGGATAACAATGCAGAAGATATGGAGCTTCAGGATGACACTAAACCTGACATCCAAGGTGTTGCAACTGAAAAGGAAGAAGATGGGGAATCTTGTAGAAAGGACTCAATGGTTGTAACATGTGCCAAACAAGATGATAGTGGCTGGAGTGCAATTGAGAAAGGTTTATATGCAAAAGGTGTAGAGATCTTCGGAAAGAACAGCTGCTTTATAGCACGCAACTTATTGAATGGTCTGAAGACCTGTTCTGAGATAGCGGAATATATCCATCGCAATGAATCCTCGATGCAGTGGGCAGCTGGAGATGGGCCAAATTCACGGTCTGATGGAAATGGGAAGGCTGACCGTAGTGATTCTATGGGAACAGAAGCTCGAACACGAACAAGATTTTGGCGTAGAAGGGGAAGAGTACGAAGGCTGAAGTACACTTGGAAGTCTGCTGGTCATCCCTCAATAAAAAAGCGAATTGCTGATAGCAAAGATCAGCCATGTAGGCAGTTTACACCATGTGATTGTCAATCCATGTGTGGAAAGCAATGTCCCTGCCTACGTAGTGGGACTTGTTGTGAAAAATACTGTGGGTGTTCGAAAGGCTGCAAGAATCGTTTCCGAGGATGTCACTGTGCAAAGAGTCAATGTCGAAGTCGACAATGCCCGTGCTTTGCTGCTGGACGTGAATGCGATCCAGATGTTTGTCGGAATTGTTGGGTTGGTTGTGGAGATGGCAGTTTGGGCGGTCCACCACAGAGAGGTGATAACTATGAATGCAGAAATATGAAGCTTCTCCTAAAGCAGCAGCAGCGAGTACTGCTTGGAAGGTCAGATGTTTCTGGATGGGGAGCATTTTTAAAGAACCCTGTTAATAAGCATGATTACCTTGGGGAGTATACTGGTGAGTTGATTTCACATCGAGAAGCTGATAAACGAGGAAAGATTTATGATCGAGAAGACTCCTCCTTCCTTTTCAACTTGAACGATCAGTACGTTCTTGATGCATACCGGAAGGGGGATAAGTTGAAATTTGCAAATCATTCACCAACTCCAAATTGTTATGCAAAGGTGATTATGGTTGCTGGTGATCATAGAGTGGGTATTTTTGCAAAGGAACGCATTGCAGCTGGTGAGGAGCTTTTTTATGATTATCGTTATGAGCCCGATAGGGCACCAGCATGGGCAAGGAAACCTGAAGGTTTGAATCCAAAGAGGGATGAAATATCAACGTCTCATCGCCGGGCTCAGAAAGTTGCTTGA___TAATTCTTTCCAATGATAAGAATCATTGGACCTTATTGTAGAAGAGCATATAAAAATGCCTCGCATTCTTTTCACGAAGGTTATATACCTTTTCTAATTGTAACATTCCCCTCCGTGGGTTCATCATTTGAATTTTGTAACTGAATTTTGTAATCTTTTCACCCCTGAATATGGGGATGATTGAATGATATCCTCCATAGCACAAGGCACAGAAGAAGTGTTTTGTGTTGGGTTATCTTGGATGTCACACAGGTTCAGATATACAAATTAAAAGGGGTCGCTCTTTTTACGAGCCAATTTAGTTTCATCTCTCGAAGAATACAAAGTTGATTACCTTTTCTTAAACAATTGTCCTTTAGTTTGAAAAACCCCtTTTTAGGAGGAACTTTCTTTCCAACTCTGGGACTGAATGAAGTCCATAATTACTTGGATTTGTGATCATTG

Fln Alignment:

sp_v1.1_unigene23688___VATEKEEDG--ESCRKDSMVVTCAKQD----DSGWSAIEKGLYAKGVEIFGKNSCFIARNLLNGLKTCSEIAEYIHRNESSMQWAAGDGPNSRSDGNGKADRSDSM-GXXXXXXXXXXXXXXXXXXXXXTWKSAGHPSIKKRIADSKDQPCRQFTPCDCQSMCGKQCPCLRSGTCCEKYCGCSKGCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVGCGDGSLGGPPQRGDNYECRNMXXXXXXXQRVLLGRSDVSGWGAFLKNPVNKHDYLGEYTGELISHREADKRGKIYDREDSSFLFNLNDQYVLDAYRKGDKLKFANHSPTPNCYAKVIMVAGDHRVGIFAKERIAAGEELFYDYRYEPDRAPAWARKPEGLNPKRDE-ISTSHRRAQKVA
P93831_______________VASELDAPGSDESLRKEEFMGETVSRGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARNLLSGFKSCWEVFQYMTCSENKASFFGGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRRRGKVRRLKYTWKSAAYHSIRKRITEKKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVIGGDGSLGVPSQRGDNYECRNMKLLLKQQQRVLLGISDVSGWGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIYDRENCSFLFNLNDQFVLDAYRKGDKLKFANHSPEPNCYAKVIMVAGDHRVGIFAKERILAGEELFYDYRYEPDRAPAWAKKPEAPGSKKDENVTPSVGRPKKLA

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
271	10	90			0.90298
329		90		10	0.90298
330		90	10		0.90298
332		90	10		0.90298
333			90	10	0.90298
336		10	90		0.90298
337	10		90		0.90298
339		10	90		0.90298
342			10	90	0.90298
345		10		90	0.90298
348	90		10		0.90298
351			10	90	0.90298
774		25		75	0.996473
967	83	16			0.994512
968	83	16			0.994512
969	83	16			0.994512
970	16	16			0.988813
971	16	83			0.994512
1124	83	16			0.994512
1145	20			80	0.995493
1146		80	20		0.995493
1147		80		20	0.995493
1148		80	20		0.995493
1151	20			80	0.995493
1152	75		25		0.996473
1154		25	75		0.996473
1155	25			75	0.996473
1163		25	75		0.996473
1167	75		25		0.996473
1324			25	75	0.996473
1325	25	75			0.996473
1330	25			75	0.996473
1337		25		75	0.996473
1338	25	75			0.996473
1339	25			75	0.996473
1341			25	75	0.996473
1344	25	75			0.996473
1346	75		25		0.996473
1347	25			75	0.996473
1348	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
894	905	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain