SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23681

Length: 1710 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23681

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF298 domain containing protein	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	dcn1-like protein 2	-	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVS3

Fln msg:

Fln protein: MHKLGRGHRDKVQQFMAITGTSEKFALQALKASDWNLEGAFDLFYSQPQIRSIPDSRHLEELYQRYKDQYTDMIMADGISSLCNDLQVDPGDIVMLVISWHMKAATMCEFSRQEFFLGLQTLGVDSIERFKERIPYLRSELKDEQKFREIYNFAFTWAKEKGQKSLALDTAIGMWQLLFAERQWPLVDQWCQFLQVRHNKAISKDTWSQLLEFAKMVDPSLSNYDAEGAWPYLIDEFVEYLGENGLLHRSS*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATGCCACACCATCTGATTGTTAGGAGAAAATGCGCCGATCATCATCCTAAGCATCGTTTCTTTGGGTAATCACACGAAGGAAAGGAGCAGCGTGCTGAGACCCGTTTTGAGCAGGAGCCGCAGCCGCAGCCGCAGCCGTAGCCGCAGTAAAGTAAAGCCACGGATCGAATACAGTGGAGTCGACTTGAGTTAAGTGCCGAGATATTTTTGTATGAAAATTAAGAGCGGGCAAACCGCAGCAAAGCGCCGCCCCTGAAGCCGGCAGCCAGCCAAAGAGGGTTAAATATTAGGGCAGTTCATCTCGCCATA_-_ATGCATAAGCTAGGTAGAGGACACCGAGACAAAGTCCAGCAGTTCATGGCAATTACGGGAACAAGTGAAAAATTTGCTCTTCAGGCATTAAAAGCGAGTGATTGGAATCTTGAAGGGGCTTTTGACCTCTTTTACAGCCAGCCACAGATAAGATCCATCCCTGATTCACGACATCTTGAAGAGCTTTATCAGCGGTATAAAGATCAATATACAGATATGATTATGGCAGATGGTATCAGCTCGCTTTGCAATGATCTACAGGTAGATCCAGGCGATATTGTGATGCTGGTCATATCTTGGCATATGAAAGCAGCAACAATGTGTGAATTTTCAAGGCAGGAATTTTTCCTGGGTTTACAAACATTGGGGGTAGATTCAATTGAAAGGTTCAAGGAAAGGATTCCATATCTACGTTCTGAGCTGAAGGACGAGCAGAAGTTCCGTGAGATCTACAATTTTGCATTTACTTGGGCAAAAGAAAAGGGTCAGAAGTCATTGGCATTAGACACGGCTATAGGCATGTGGCAATTATTATTTGCAGAAAGGCAATGGCCATTAGTTGATCAGTGGTGTCAGTTTTTGCAGGTCAGGCATAACAAAGCTATTTCTAAGGACACATGGTCTCAACTGTTGGAATTCGCAAAGATGGTAGACCCCTCATTGTCCAATTATGATGCAGAAGGTGCATGGCCGTATCTTATTGATGAGTTTGTTGAGTACTTGGGTGAGAATGGACTCCTTCATAGGAGCAGCTAG___CTCATTCATCATTTCATTATAAGGTGCTCTTACATATAATTCGATGTGAAAGCACCCTGTATTCTACCACACTAAATGCATCCTTCAGAAACTCTTTAAGTTCTTATTTGGGAAGTTCGATTGTTTACTTCTTTTTTGCTGCCTCTGTTTATTATTGTCTAGAAGCAACTGACAGCAAAAGAAAGTAGTACTACTCAGTTCATGACACATGTCAGTGTAACTGCATTGTGCTTCTTGTTGTTTTTAAAATGTTTGAGTATCAAATTGAACCACATAATTGTCGTATATTGCAGGGGGCATATTAATAGGGGCAATTGATTGTCAGGGAGATTACTAGAGATAAATTGTCTTGGAGACTATTAAAGATGAGATAAAAGTAATATGGTTTTCAGCAAGGCATTTATTGTGGGAAACCACTTTATAGTGATTTTGATTTGTGGTGGTAAGATAGTATTTTTGAGATAATAAAATCATGTCTCCAGTACCTTTCAGGTCTTATTGTACTACGTAACTGTTTTACTTTGTTCAAAAGTGTACTATTGGCATCACGAAGCCTGCAAAGATCAAATATCATTCAGTTCAACCGAAATGGTAGCTGATAGCTCACTTGTTAAAAC

Fln Alignment:

sp_v1.1_unigene23681___MHKLGRGHRDKVQQFMAITGTSEKFALQALKASDWNLEGAFDLFYSQPQIRSIPDSRHLEELYQRYKDQYTDMIMADGISSLCNDLQVDPGDIVMLVISWHMKAATMCEFSRQEFFLGLQTLGVDSIERFKERIPYLRSELKDEQKFREIYNFAFTWAKEKGQKSLALDTAIGMWQLLFAERQWPLVDQWCQFLQVRHNKAISKDTWSQLLEFAKMVDPSLSNYDAEGAWPYLIDEFVEYLGENGLLHRSS
A9NVS3_______________MHKLGRGHRDKVQQFMAITGTSEKFALQALKASDWNLEGAFDLFYSQPQIRSIPDSRHLEELYQRYKDPYTDMIMADGISLLCNDLQVDPGDIVMLVISWHMKAATMCEFSRQEFFLGLQTLGVDSIEKFRERIPYLRSELKDEQKFREIYNFAFTWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDQWCQFLQARHNKAISKDTWSQLLEFAKMVDPSLSNYDAEGAWPYLIDEFVEYLSENGLIHRSS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
339	80	20			0.995493
342			20	80	0.995493
343	80			20	0.995493
345	20		80		0.995493
346		20		80	0.995493
347	80	20			0.995493
348			80	20	0.995493
349	80			20	0.995493
352	20	80			0.995493
353		80		20	0.995493
354	80		20		0.995493
355		80		20	0.995493
359		20	80		0.995493
360	80			20	0.995493
1042		9		90	0.999842
1045		9		90	0.999842
1047	90			9	0.999842
1049	9	4		86	0.999642
1050	90	9			0.999842
1056		9	90		0.999872
1059	90			9	0.999872
1060		9	90		0.999872
1062	90	9			0.999872
1065		9	90		0.999872
1260		88	11		0.999937
1456	71	28			1.0
1651		10		90	0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
144	166	AGCCGC AGCCGC AGCCGC AGCCG	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain