SustainPineDB

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Assembly info
Unigenes
SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23680

Length: 471 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene23680
CGTCGTGACCTTGGCTGTCACTCAAGTTCCCTTTTCGAGTTCCTGAGAGATATATAAAGCCAAAGATCAAAGGAAAGTTTTCTTCTCATACAATTCCTCATTTCTCTCATCCATGAAACTCTGCTTTCCTGGCAAGTAGGATTGAGATTTGATTTGTCTTGGAGGTCTTCGTATTGAATCTTCAGCAGTTCAAGTTCGCAAGTAGGATTGAGATTTGATTTCTCTTGGAGGTCTTCGTATCGAATCTTCAGCAGGAATATAATGTCCGGCCAAGTAACATTAGTGATAAAAGTTATTTCATTGGAAGATTTGTTCAAGGTTTACCTGCTTTTTCTAAGAAGAAAGGTTCCGAAGCTAAGTGGTTTCTACACAAAGAAGGTCTAAAAGGTCGGCAGTTGACAGATGCTTTACGGGAAAAGTACAAAAATAAGCCGTGGATATTGGAGGATGAGACAGGTCAGCAACAATATC

Ace file of the UniGene sp_v1.1_unigene23680

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tfiif-alpha, putative n=1 Tax=Ricinus communis RepID=B9S068_RICCO	-	-	5.0e-28	76%
FL-Next	Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74	-	-	0.0	67%
Blast2go	transcription initiation factor	-	-	5.51683e-28	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	5.51683e-28	80%
Blast2go	nucleus	GO:0005634	Cellular Component	5.51683e-28	80%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9SU25-2

Fln msg: Distance to subject end: 416 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 84 - 543

Fln protein: FLLEVFVSNLQQEYNVRPSNISDKSYFIGRFVQGLPAFSKKKGSEAKWFLHKEGLKGRQLTDALREKYKNKPWILEDETGQQQY

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCCCTTTTCGAGTTCCTGAGAGATATATAAAGCCAAAGATCAAAGGAAAGTTTTCTTCTCATACAATTCCTCATTTCTCTCATCCATGAAACTCTGCTTTCCTGGCAAGTAGGATTGAGATTTGATTTGTCTTGGAGGTCTTCGTATTGAATCTTCAGCAGTTCAAGTTCGCAAGTAGGATTGAGATTTGATTTCTCTTGGAGGTCTTCGTATCGAATCTTCAGCAGGAATATAATGTCCGGCCAAGTAACATTAGTGATAAAAGTTATTTCATTGGAAGATTTGTTCAAGGTTTACCTGCTTTTTCTAAGAAGAAAGGTTCCGAAGCTAAGTGGTTTCTACACAAAGAAGGTCTAAAAGGTCGGCAGTTGACAGATGCTTTACGGGAAAAGTACAAAAATAAGCCGTGGATATTGGAGGATGAGACAGGTCAGCAACAATATC

Fln Alignment:

sp_v1.1_unigene23680___VSNLQQEYNVRPSNISDKSYFIGRFVQGLPAFSKKKGSEAKWFLHKEGLKGRQLTDALREKYKNKPWILEDETGQQQY
Q9SU25-2_____________VTRLIREYNVRAAAPTDKNYFIGRFVTGLPNF--KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDETGQFQY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
131	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain