SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23677

Length: 2838 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23677
CGAGCATTAATTGCCACGTGTAGGACGCGCCCTTCTCGATTGTTCTTGAAATAACCGGTGCAGTATCTGGAATGTCCGAAAGCTCTGGAAATCTACAAGTATTGGCGTCGTGACCTTGGCTGTCACTCAAATGTTCCTTGCATTTTAGTCTGAAGTACGATTTACCTGCCTTAGATCTTCCATTTAAGACATTCGGAGACGGTTCTTGGTTTTGGAAAACTCCACTTCGGCGCGATTTCTGTGTTGTTTGGTCTTTTGCTCAACAAACTTTGACAGGGTTTTACTGCTACTGGGGCCGGTTCGTCGCTATTATTTACAGGTTTTGCTGGACGAAACGGAGTTTCTGCGCCGTTGTATTAAAGAAAGAGGTTTTGCGTGTCTTAAATTTCCGGGTTTTTAATTTGTAATTTTCCAAAGATCTGGACGCCTAGAAGAATTGTGAAATATTTTGTAATTTTGTAATTTTCCAAAGATCTGGACACCTGGAAGAATTGTGAAATATTTTGTTATTTTGAGTGGCTTTGCATTAACATCCCTTAAAAAAGGGGGAATTTCTCTCGACTGTTTTTTACTATTTAACGCGGAATTAAGGGTTAAGGTTTTGGTGCAAAAATGACCGAGGCAGAGACAGCGTATACTGTAGCTTCCGACAATGAAGCGGTTAGCGATGATGCTGAACATCCTATCCCCTTCGTGGAAACGGCTATTGGAATCGATGTTGGAACCTTCCAGTGCCGTGTAGCCGTGTGGAAGGATTCAAAGATCGAGCTTCTACAAAACCCTGGAGGACTTAAAATGATGCCCTCTTATGTTCTCTTCATGGGTGATAGTCCTTCGAGTGGAATAAGTGCAGAAACACCCAACGACGAGAAGGAATTGCTTTCAGGAAATGCAATTTTGAATGTGAAAAGACTAATTGGCAGGACGGACACTGATCCTGTTGTTCACAAGAGCAAGAAATTGCCATTTATGGTGCAAACTTTGGATATTGGTGTGCGCCCCTTTATTGCAGCGTTGACAAATGAGGTGTGGCGGTCGACCACTCCGGAAGAAGTACTCGCGATTTTGCTAGTAGAGTTACGAGCCATGGCCGAGGTTCAGCTAGGACGTGTTGTGCGCACCGTTGTATTAACAATGCCTGTTTCCTTTAGCCGGTTTCAGCAAACTCGTGTTGAAAGGGCTTGTGCTATGGCTGGGTTGCATGTTCTTCGCTTGATGCCAGAACCCACAGCAGTAGCCCTGCTTTATGCTCAGCAGCAACAGATGACATCTCAGGCTACTATGGGGAGTGGTACTGAGAAGCTCGCATTGATTTTCAATATGGGTGGTGGATACTGTGATGTTGCTGTCACTGCCACAGCCGGTGGGGTTTCTCAGATTAAAGCTCTTGCAGGGGATGCAATTGGAGGCGAGGATATCTTACAAAATGTTATCCAGCATGTTGCCCCTAATGTAGACCTTTCGGTGGCGAAAGGTAGGGATGCAAGCAAATCTTCTGCAATGCTTCGAATCGCTGTTCAGAAAGCTATCCACACTCTCTCCACCAATACTAGTGCTTCTGTTGAAGTTGATTTGGGAGGTGGGCAGAAGATATCAAAAACCCTGCTACGAGACGAGTTTGAGGAAGTCAATAATGAGGTTTTTGAAAAATGCGAAAACCTTATTGTGCAGTGTTTACATGATGCACAGATTGATGTGGAGAACATAGCGGATGTTGTAATTGTCGGTGGCTGCTCACACATTCCAAAAATACGGAGCCTGGTTCTGAGGCTTTGCAAGAGCAAGAATATATATGACGGTATGAAACCTTTGGAAGCTGCAGTATGTGGTGCCGCTCTGGAAGGCGCAATTGCATCAGGGATTTCTGATCATAACCTTGACCTACTAACGATTCAAGCAACTCCTTTGAGCTTGGGCGTTAGAGCGGATGATGCTGACTTTGTGCCCATTATTCACAGAAATGCCACTATTCCAGCAAGGAGAGATGCATTTTTTACAACAAGTCATGACAATCAGTCTGAGGCTCTGATTGTTGTCTATGAGGGTGAAGGGAAGCAAGTTGGGGAGAACCATTTGTTGGGATTTTTTATGGTGTCAGGAATCCCACCTGCCCCAAAAGGCATTCCATTAATCAATGTCTGTATGGATGTTGATGCATCAAATGTGTTGAGAGTATTTGCAGGAGTGACAATGCCAGATTCAAAGGGTCCTGTGCTTCCTTTCGTGGAAGTCAGGATGCCTACCATGGATGATGGTCATGGATGGTGCATTGAGGCTCTTCTCAAAAAGTATGGGGCATCTCTTGATATTAGCACCCCTCCAAAGCATTCTCAGCAGCAGCAGCAGTAAAGAGACTTACGATTCTTCTACCCCAGCTTCAGGTGGGAGAGAACCTCCTATTGTTCTGGGCGAGAGCCAATGTGGTTTTAATTTTACAACTCTCAAAATTGTTAGCGTAATAGGGGTTTTTAGTAGGCTTATATGAGTTTTGTTGTCAGGGATATCGGTAGAGCAGTGTGTTTTATTGTAAATATCGGAGTATGATGTCAGGAATAGATTATAGAACAACTGGAAAAACTGTTGGAAGGAGAAAATATTCGGAGGACTGCAACTTGCAAATTTCATGGTATGATAATGAATTTGATGAACTGGAAGGTTGTCGCTCTGTTTTCTGTTCAAGTGGCTAAAGTTTTTTTCCAATGTAAAGGTACCAGGACATCCATAGCTCTTAATATTTGGACAAATATCAGGGGATTCAAGGTAACATGAAACGATTGTATTGAATGGTTTATGGAAAATAAAAAGAATTTTAAATATTCAGAGGACTGCAACTTGCAG

Ace file of the UniGene sp_v1.1_unigene23677

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein 70kD, putative (EC:1.3.1.74)	-	-	62%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	66%
Blast2go	heat shock	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	72%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	72%
Blast2go	response to heat	GO:0009408	Biological Process	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HJX1

Fln msg:

Fln protein: MTEAETAYTVASDNEAVSDDAEHPIPFVETAIGIDVGTFQCRVAVWKDSKIELLQNPGGLKMMPSYVLFMGDSPSSGISAETPNDEKELLSGNAILNVKRLIGRTDTDPVVHKSKKLPFMVQTLDIGVRPFIAALTNEVWRSTTPEEVLAILLVELRAMAEVQLGRVVRTVVLTMPVSFSRFQQTRVERACAMAGLHVLRLMPEPTAVALLYAQQQQMTSQATMGSGTEKLALIFNMGGGYCDVAVTATAGGVSQIKALAGDAIGGEDILQNVIQHVAPNVDLSVAKGRDASKSSAMLRIAVQKAIHTLSTNTSASVEVDLGGGQKISKTLLRDEFEEVNNEVFEKCENLIVQCLHDAQIDVENIADVVIVGGCSHIPKIRSLVLRLCKSKNIYDGMKPLEAAVCGAALEGAIASGISDHNLDLLTIQATPLSLGVRADDADFVPIIHRNATIPARRDAFFTTSHDNQSEALIVVYEGEGKQVGENHLLGFFMVSGIPPAPKGIPLINVCMDVDASNVLRVFAGVTMPDSKGPVLPFVEVRMPTMDDGHGWCIEALLKKYGASLDISTPPKHSQQQQQ*

Protein Length: 580

Fln nts: CGAGCATTAATTGCCACGTGTAGGACGCGCCCTTCTCGATTGTTCTTGAAATAACCGGTGCAGTATCTGGAATGTCCGAAAGCTCTGGAAATCTACAAGTATTGGCGTCGTGACCTTGGCTGTCACTCAAATGTTCCTTGCATTTTAGTCTGAAGTACGATTTACCTGCCTTAGATCTTCCATTTAAGACATTCGGAGACGGTTCTTGGTTTTGGAAAACTCCACTTCGGCGCGATTTCTGTGTTGTTTGGTCTTTTGCTCAACAAACTTTGACAGGGTTTTACTGCTACTGGGGCCGGTTCGTCGCTATTATTTACAGGTTTTGCTGGACGAAACGGAGTTTCTGCGCCGTTGTATTAAAGAAAGAGGTTTTGCGTGTCTTAAATTTCCGGGTTTTTAATTTGTAATTTTCCAAAGATCTGGACGCCTAGAAGAATTGTGAAATATTTTGTAATTTTGTAATTTTCCAAAGATCTGGACACCTGGAAGAATTGTGAAATATTTTGTTATTTTGAGTGGCTTTGCATTAACATCCCTTAAAAAAGGGGGAATTTCTCTCGACTGTTTTTTACTATTTAACGCGGAATTAAGGGTTAAGGTTTTGGTGCAAAA_-_ATGACCGAGGCAGAGACAGCGTATACTGTAGCTTCCGACAATGAAGCGGTTAGCGATGATGCTGAACATCCTATCCCCTTCGTGGAAACGGCTATTGGAATCGATGTTGGAACCTTCCAGTGCCGTGTAGCCGTGTGGAAGGATTCAAAGATCGAGCTTCTACAAAACCCTGGAGGACTTAAAATGATGCCCTCTTATGTTCTCTTCATGGGTGATAGTCCTTCGAGTGGAATAAGTGCAGAAACACCCAACGACGAGAAGGAATTGCTTTCAGGAAATGCAATTTTGAATGTGAAAAGACTAATTGGCAGGACGGACACTGATCCTGTTGTTCACAAGAGCAAGAAATTGCCATTTATGGTGCAAACTTTGGATATTGGTGTGCGCCCCTTTATTGCAGCGTTGACAAATGAGGTGTGGCGGTCGACCACTCCGGAAGAAGTACTCGCGATTTTGCTAGTAGAGTTACGAGCCATGGCCGAGGTTCAGCTAGGACGTGTTGTGCGCACCGTTGTATTAACAATGCCTGTTTCCTTTAGCCGGTTTCAGCAAACTCGTGTTGAAAGGGCTTGTGCTATGGCTGGGTTGCATGTTCTTCGCTTGATGCCAGAACCCACAGCAGTAGCCCTGCTTTATGCTCAGCAGCAACAGATGACATCTCAGGCTACTATGGGGAGTGGTACTGAGAAGCTCGCATTGATTTTCAATATGGGTGGTGGATACTGTGATGTTGCTGTCACTGCCACAGCCGGTGGGGTTTCTCAGATTAAAGCTCTTGCAGGGGATGCAATTGGAGGCGAGGATATCTTACAAAATGTTATCCAGCATGTTGCCCCTAATGTAGACCTTTCGGTGGCGAAAGGTAGGGATGCAAGCAAATCTTCTGCAATGCTTCGAATCGCTGTTCAGAAAGCTATCCACACTCTCTCCACCAATACTAGTGCTTCTGTTGAAGTTGATTTGGGAGGTGGGCAGAAGATATCAAAAACCCTGCTACGAGACGAGTTTGAGGAAGTCAATAATGAGGTTTTTGAAAAATGCGAAAACCTTATTGTGCAGTGTTTACATGATGCACAGATTGATGTGGAGAACATAGCGGATGTTGTAATTGTCGGTGGCTGCTCACACATTCCAAAAATACGGAGCCTGGTTCTGAGGCTTTGCAAGAGCAAGAATATATATGACGGTATGAAACCTTTGGAAGCTGCAGTATGTGGTGCCGCTCTGGAAGGCGCAATTGCATCAGGGATTTCTGATCATAACCTTGACCTACTAACGATTCAAGCAACTCCTTTGAGCTTGGGCGTTAGAGCGGATGATGCTGACTTTGTGCCCATTATTCACAGAAATGCCACTATTCCAGCAAGGAGAGATGCATTTTTTACAACAAGTCATGACAATCAGTCTGAGGCTCTGATTGTTGTCTATGAGGGTGAAGGGAAGCAAGTTGGGGAGAACCATTTGTTGGGATTTTTTATGGTGTCAGGAATCCCACCTGCCCCAAAAGGCATTCCATTAATCAATGTCTGTATGGATGTTGATGCATCAAATGTGTTGAGAGTATTTGCAGGAGTGACAATGCCAGATTCAAAGGGTCCTGTGCTTCCTTTCGTGGAAGTCAGGATGCCTACCATGGATGATGGTCATGGATGGTGCATTGAGGCTCTTCTCAAAAAGTATGGGGCATCTCTTGATATTAGCACCCCTCCAAAGCATTCTCAGCAGCAGCAGCAGTAA___AGAGACTTACGATTCTTCTACCCCAGCTTCAGGTGGGAGAGAACCTCCTATTGTTCTGGGCGAGAGCCAATGTGGTTTTAATTTTACAACTCTCAAAATTGTTAGCGTAATAGGGGTTTTTAGTAGGCTTATATGAGTTTTGTTGTCAGGGATATCGGTAGAGCAGTGTGTTTTATTGTAAATATCGGAGTATGATGTCAGGAATAGATTATAGAACAACTGGAAAAACTGTTGGAAGGAGAAAATATTCGGAGGACTGCAACTTGCAAATTTCATGGTATGATAATGAATTTGATGAACTGGAAGGTTGTCGCTCTGTTTTCTGTTCAAGTGGCTAAAGTTTTTTTCCAATGTAAAGGTACCAGGACATCCATAGCTCTTAATATTTGGACAAATATCAGGGGATTCAAGGTAACATGAAACGATTGTATTGAATGGTTTATGGAAAATAAAAAGAATTTTAAATATTCAGAGGACTGCAACTTGCAG

Fln Alignment:

sp_v1.1_unigene23677___AETAYTVASDNEAVSDDAEHPIPFVETAIGIDVGTFQCRVAVWKDSKIELLQNPGGLKMMPSYVLFMGDSPSSGISAETPNDEKELLSGNAILNVKRLIGRTDTDPVVHKSKKLPFMVQTLDIGVRPFIAALTNEVWRSTTPEEVLAILLVELRAMAEVQLGRVVRTVVLTMPVSFSRFQQTRVERACAMAGLHVLRLMPEPTAVALLYXXXXXXXXXXXXXXGTEKLALIFNMGGGYCDVAVTATAGGVSQIKALAGDAIGGEDILQNVIQHVAPNVD-LSVAKGRDASKSSAMLRIAVQKAIHTLSTNTSASVEVDLGGGQKISKTLLRDXXXXXXXXXXXKCENLIVQCLHDAQIDVENIADVVIVGGCSHIPKIRSLVLRLCKSKNIYDGMKPLEAAVCGAALEGAIASGISD--HNLDLLTIQATPLSLGVRADDADFVPIIHRNATIPARRDAFFTTSHDNQSEALIVVYEGEGKQVGENHLLGFFMVSGIPPAPKGIPLINVCMDVDASNVLRVFAGVTMPDSKGPVLPFVEVRMPTMDDGHGWCIEALLKKYGASLDISTPPK
B9HJX1_______________AEPQYTVASDSESTGEEKSSSA-FPETAIGIDIGTSQCSVAVWNGSQVELLKNTRNQKLMRSYVTFKDEVPSGGVSNQLSH-EYEILSGAAIFNMKRLIGRVDTDPVVHASKRLPFLVQTLDIGVRPFIAALVSNAWRSTTPEEVLAIFLVELRAMAEVQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQTVHENMGSGSEKNALIFNMGAGYCDVAVTATAGGVSQIKALAGAAIGGEDMLQNMMQHLLPNSENLFLSHGINEIKSLGLLRVATEDAIHRLSSQSSVQVDVDLRNGSKICKVVTREEFEEVNLKIFEKCESLLTQCLRDSKVDIEDLTDVILVGGCSYIPNIRNVVKGVCKKEELYKVINPLEAAVCGAALEGAVASGISDPFGSLDLLTIQATPLGVGIRADGNSFVPIIPRNTTMPARKELIFTTTHDNQTEALILVYEGEGTKVEENHLLGYFKIMGIPAAPKGIPEINVCMDIDASNALRVFAGVVMPGTDQPMAPFMEVRMPTVDDGHGWCAEALNRTYGSTLDLVTVQK

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
106		80		20	0.995493
110	20		80		0.995493
113	80			20	0.995493
119		20	80		0.995493
126		80		20	0.995493
127			20	80	0.995493
128		80	20		0.995493
129	80			20	0.995493
400	25			75	0.996473
403	25			75	0.996473
506		20		80	0.995493
830	87		12		0.992554
862		20		80	0.995493
946	16		83		0.994512
948		16		83	0.994512
969	87		12		0.992554
1044	11	88			0.923564
1346		17		82	1.0
1347		17	82		1.0
1616	85		14		0.993533
1698			14	85	0.993533
1700	85		14		0.993533
1728		12		87	0.992554
1740		77		22	0.999999
1809	10		90		0.90298
2073		10	90		0.90298
2166	83	16			0.994512
2193			87	12	0.992554
2233			88	11	0.923564
2234	88	11			0.923564
2236		11	88		0.923564
2415	22		77		0.999999
2441	91		8		0.999807
2451	90	9			0.999842
2452	90			9	0.999842
2728	46		53		1.0
2802	60		40		1.0
2818	66		33		0.997452
2819	66			33	0.997452
2820	66			33	0.997452
2821		33		66	0.997452
2822	66		33		0.997452
2823		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2332	2346	CAG CAG CAG CAG CAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain