SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23672

Length: 1840 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23672

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Syntaxin-like protein n=3 Tax=core eudicotyledons RepID=Q3HRZ4_SOLTU	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	syntaxin	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell shape during vegetative growth phase	GO:0000903	Biological Process	85%
Blast2go	stomatal movement	GO:0010118	Biological Process	85%
Blast2go	amyloplast organization	GO:0009660	Biological Process	85%
Blast2go	negative gravitropism	GO:0009959	Biological Process	85%
Blast2go	vacuole organization	GO:0007033	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVS9

Fln msg:

Fln protein: MSFQDLEAGRPLSVRREAINGKQDPSQAVAAGVFQINTAVSTFQRLVNTLGTPKDTPELRERLHKTRQHIGQLVKDTSAKLKAASETDQHTAVSANKKIADAKLAKDFQAVLKEFQKGQRLAAERETAYTPFVPQAVLPSSYVASELNLSPDKTQEQQAVLIESRRQEVLQLENEVVFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGVMIDDIDSNIESSYSATVQAKSQLNKASKSQKSNSSLTCLLLVIFGVVLLIVIIVLAA*

Protein Length: 275

Fln nts: ATGGGAGGGCAAGGGTCCGAGTCAGACCGCGGGCAGGGGGTCAGCAAAGTCTGTCATCAATACCATTGAGCCAACCCTTTCCTCATAAATAATTTCCATCCATCTTCCTTTCATCTTCTCTGCAATTCTATCTCCGCTGGCCCAGGTTGCGGGATCGAATTCCCTCCCGAAATCCATAAAAGCATCGATGCAGCCCAGCGGGTTCTTTATATTCGCCTTCCCCTTTGAATTCTAACGCAATCCGAAAAAAATTCTTGTAATTTCTGACCTGTATTGGCTCCAGTTGAGTTTCAAAATCATTTATAGCGCTTTTGGCTTCTTTGAGCTGGCCACAACAAGATCTGGTTTGCAGGAGTTCGGCCGCTTGAAATATTTGTAGGTTTTCATAAGGAGGGCATTAAAGGGATCGCTTAGATTTGATCGATCGTGGGAAA_-_ATGAGCTTTCAGGATTTAGAAGCGGGCCGCCCCTTGTCTGTAAGGAGAGAGGCCATAAATGGGAAGCAAGACCCGTCTCAGGCCGTGGCTGCTGGTGTTTTTCAAATCAATACTGCCGTTTCGACGTTTCAAAGGCTTGTCAATACCCTCGGAACGCCCAAGGATACTCCAGAACTCAGGGAGCGATTGCATAAGACTAGGCAACACATTGGGCAGCTGGTAAAGGACACATCTGCTAAACTGAAAGCTGCCAGTGAAACTGATCAGCATACGGCAGTTAGTGCAAACAAGAAGATAGCAGATGCAAAACTTGCAAAAGATTTTCAAGCTGTTCTAAAGGAGTTTCAGAAAGGCCAACGGCTTGCAGCTGAACGTGAGACAGCTTATACACCCTTTGTTCCCCAAGCAGTATTGCCTTCAAGCTATGTTGCAAGTGAATTGAATTTAAGTCCAGACAAAACGCAGGAGCAGCAGGCTGTTCTCATAGAATCTAGGAGACAGGAAGTCCTTCAGTTAGAGAATGAAGTTGTATTTAATGAAGCCATTATTGAAGAGCGGGAACAAGGGATACAGGAGATCCAGCAACAAATTGGAGAAGTCAATGAGATATTTAAAGATCTTGCAGTTCTTGTTCATGAGCAGGGAGTCATGATTGATGACATTGATTCTAATATTGAGAGTTCATACTCTGCGACTGTACAAGCTAAAAGTCAACTTAACAAAGCTTCCAAGAGTCAAAAATCTAACTCATCTCTGACTTGCTTGCTACTCGTAATTTTTGGCGTGGTGTTGCTTATTGTCATCATAGTTCTTGCAGCGTAA___TTGGTGACCTGTTCGAGTGTCTATTTGGTATCCTTTCCTTTTTAATCTACAACGGTGTCTGCAGCTTGGGGTGGGACAAACTTGGACCTGTTTACTATTTCTTGGGTACAATTTTTGATGTATCTGAAATGCTGGGTCCCTTTCTCCGTATTCAATACCCCTCATGTTTCCTTGCATTTTGGCAGGGTGCTAAGGTTTTATGACAAATATGGTTAGTGGTATGATTCATTTTGTATCGAGAGACGAAAAAATTAGTCGTGTGTATTATATATGGTCCAGTCATTTGTTTGATAGTTCTAGTTAGCTAAGCATGCACAAGGATGATTTGTGCCTAGTAATGAATTGCTGTTTTAAAGTTTGTGCAGCTGTAGTTATGCTTGTTGGGAGAGCCATTGTTTCGTTTTGTATCTACAGTTTATTGTTCTATCACTAACAAATTCGTTAAACTGCTGGCATTGTAATTTGTGACAGCTTTATTCTTTTGTTTCTCTCATATTTCTTTCCTAATAAATGCCTACCCTTTCCTGCTTATTGCATTGCAACGAAGGAAATTCCGGCATTCTGAGGTCATTTGAAGCTGTATG

Fln Alignment:

sp_v1.1_unigene23672___MSFQDLEAGRPLSVRREAINGKQDPSQAVAAGVFQINTAVSTFQRLVNTLGTPKDTPELRERLHKTRQHIGQLVKDTSAKLKAASETDQHTAVSANKKIADAKLAKDFQAVLKEFQKGQRLAAERETAYTPFVPQAVLPSSYVASELNLSPDKTQEQQAVLIESRRQEVLQLENEVVFNEAXXXXXXXXXXXXXXXXXXVNEIFKDLAVLVHEQGVMIDDIDSNIESSYSATVQ
A9NVS9_______________MSFQDLESGRPLSIRREAINGKQDPSQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELRERLHKTRQHIGQLVKDTSAKLKAASETDQHTEVSANKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFIPQAVLPSSYIASELGLSPDKTQEQQALLIESRRQEVLQLENEVVFNEAIIEEREQGLQEIQQQIGEVNEIFKDLAVLVHEQGVMIDDIDSNIESSYSATVQ

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
252	88			11	0.923564
254	11			88	0.923564
364			20	80	0.999996
475	14		85		0.993533
515	85		14		0.993533
516	14		85		0.993533
524		28	42	28	1.0
525			42	57	1.0
526		71	28		1.0
527		28	71		1.0
528		71		28	1.0
529	42		42	14	1.0
533	33			33	1.0
534			50	50	1.0
536			40	60	1.0
537	40			60	1.0
540	40		60		1.0
541	40		60		1.0
542		50		50	1.0
943	10	90			0.90298
945			10	90	0.90298
946		90	10		0.90298
947	90		10		0.90298
1309	80		20		0.995493
1431	33		66		1.0
1435			25	75	0.996473
1436			25	75	0.996473
1437			25	75	0.996473
1449	50			50	1.0
1534		33	66		1.0
1602			84	15	1.0
1605	83		16		1.0
1642	13		86		1.0
1647		70		29	1.0
1747			17	82	1.0
1831	33	66			0.997452
1833		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain