SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23668

Length: 1070 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23668

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Progesterone 5-beta-reductase n=1 Tax=Nerium oleander RepID=D6N9X0_NEROL	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	progesterone 5-beta-reductase	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUD2

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 356 - 399

Fln protein: DTIADGSEDKSGKQQRVALVIGVTGIVGNSLAEILPMPDTPGGPWKIYGVARRSKPDWSPDTPVQYIQCDVLDRKLTLQKISPLKDVTHLFWVVWVSRETEEQNCEDNGKMLSNVLDALLPNAENLQHISLQTGAKHYLGPFDTVARNRSFQPNEAPYHEELPRLPVPLFYYTLEDIVFEAAKKKEGLTWSIHRPTIIFGFSPWSLMNVVGTLCVYAAICKHEGLPFKYPGNRITWEQFMDMSDADLVAEQEIWAATDPYAKNQAFNCSNGDVFKWKRLWGIIAEKFDLEPLPYQGEGFSLAETMKDKGPVWDAIVRENKLHPTKIEEVGSWWFADLTLNLPQETVHSMNKSKEYG

Protein Length: 357

Fln nts: TGATACCATAGCTGACGGTTCTGAAGACAAATCGGGGAAACAACAGAGAGTTGCGCTGGTGATAGGGGTAACAGGAATTGTGGGCAATAGCTTGGCAGAAATCTTGCCTATGCCTGACACTCCTGGTGGACCTTGGAAAATTTATGGAGTTGCTAGGAGGTCTAAGCCTGATTGGTCACCAGATACTCCAGTACAGTACATTCAATGCGATGTTCTGGATAGAAAACTCACTCTACAAAAAATTTCACCATTGAAAGATGTAACCCACCTCTTCTGGGTTGTTTGGGTGAGCAGAGAAACAGAGGAGCAGAACTGTGAGGACAATGGAAAAATGTTGAGTAACGTGTTAGATGCACTGCTGCCCAATGCAGAGAATTTACAGCACATCTCTCTTCAGACTGGGGCAAAACACTACTTGGGTCCATTTGATACAGTGGCCAGGAATCGCTCTTTTCAGCCAAACGAGGCACCTTATCATGAAGAGCTTCCAAGGTTACCTGTGCCCCTTTTTTATTATACTCTGGAGGATATTGTTTTTGAGGCTGCCAAGAAAAAAGAGGGATTAACATGGTCCATTCACCGTCCCACAATTATATTTGGCTTTTCTCCTTGGAGCTTAATGAATGTTGTAGGCACACTCTGTGTTTATGCCGCCATTTGCAAACACGAGGGGCTGCCTTTCAAATACCCAGGCAACAGAATTACATGGGAACAGTTTATGGATATGTCTGATGCAGATTTGGTTGCAGAGCAAGAAATTTGGGCTGCCACAGACCCTTATGCCAAGAACCAGGCTTTTAACTGTAGTAATGGAGATGTGTTTAAATGGAAACGCCTATGGGGAATCATAGCAGAAAAATTTGATCTGGAGCCATTACCATACCAGGGTGAAGGATTTAGTCTGGCTGAGACTATGAAAGACAAAGGTCCAGTTTGGGATGCAATTGTCAGAGAAAATAAGCTGCACCCAACAAAAATTGAGGAAGTGGGAAGTTGGTGGTTCGCAGATTTGACATTAAATCTTCCCCAGGAAACCGTACATAGCATGAATAAGAGTAAAGAGTATGGTT

Fln Alignment:

sp_v1.1_unigene23668___DTIADGSEDKSGKQQRVALVIGVTGIVGNSLAEILPMPDTPGGPWKIYGVARRSKPDWSPDTPVQYIQCDVLDRKLTLQKISPLKDVTHLFWVVWVSRETEEQNCEDNGKMLSNVLDALLPNAENLQHISLQTGAKHYLGPFDTVARNRSFQPNEAPYHEELPRLPVPLFYYTLEDIVFEAAKKKEGLTWSIHRPTIIFGFSPWSLMNVVGTLCVYAAICKHEGLPFKYPGNRITWEQFMDMSDADLVAEQEIWAATDPYAKNQAFNCSNGDVFKWKRLWGIIAEKFDLEPLPYQGEGFSLAETMKDKGPVWDAIVRENKLHPTKIEEVGSWWFADLTLNLPQETVHSMNKSKEYG
A9NUD2_______________ETKGESSEDKSEKQQGVALVIGVTGIVGNSLVEILPLSDTPGGPWKIYGVARRPKPDWSPDTPVEYIQCDVLDRKLTLEKISPLKDVTHLFWVVWVSRETEEQNCEDNGRMLSNVLDALLPNAENLQHICLQTGAKHYLGPFDAVARNRYFQPHEAPYHEELPRLPVPNFYYTLEDIVFEAAKKKDGLTWSIHRPSFIFGFSPWSLMNILGTLCVYAAICKHEGLPFKYPGNRITWEQFVDISDAELIAEQEIWAATYPHAKNQAFNCSNGDVLKWKRLWGIIAEKFDLEPLPYKGEGFSLAEAMKDKGPVWDALVRENKLHPTKIEEVGNWWFADFTLNLPQETVHSMNKSKEYG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
574	20	80			0.995493
578			20	80	0.995493
582		80		20	0.995493
583		20	80		0.995493
650		20		80	0.995493
721		77		22	0.999999
727		77		22	0.999999
728	77		22		0.999999
744	77		22		0.999999
803		42		57	1.0
823			57	42	1.0
837		60		40	1.0
839	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain