SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23666

Length: 583 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23666

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to gibberellin-stimulated transcript 1 like protein n=3 Tax=Arabidopsis RepID=Q8LFM2_ARATH	-	-	1.0e-20	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	gibberellin-regulated family protein	-	-	7.09722e-22	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gibberellin regulated protein	IPR003854	-	7.09722e-22	70%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
197		50	50		1.0
199	50			50	1.0
200	50	50			1.0
207	50			50	1.0
208		25		75	0.996473
209		50	50		1.0
210		50	50		1.0
214			50	50	1.0
217		25		50	0.995533
218		75		25	0.996473
219	25		25	25	0.997389
225			20	80	0.995493
227		20		80	0.995493
231			20	80	0.995493
232	20		80		0.995493
234	80	20			0.995493
235	60	20		20	0.99255
239	80	20			0.995493
240	80			20	0.995493
241	80		20		0.995493
243		20		80	0.995493
244			80	20	0.995493
271		80		20	0.995493
347		20		80	0.995493
359		80		20	0.995493
420		20		80	0.995493
453		80		20	0.995493
538	14	85			0.993533
551		71		28	1.0
561	66	33			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
559	570	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain