SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23660

Length: 1062 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23660

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL3J, putative	-	-	4.0e-15	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	zinc finger family protein	-	-	7.19225e-15	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	7.19225e-15	51%
Blast2go	Zinc finger, RING-CH-type	IPR011016	-	7.19225e-15	51%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	7.19225e-15	51%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	7.19225e-15	51%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
75		66	33		0.997452
80		66		33	0.997452
81		66	33		0.997452
87	33	66			0.997452
88		33	66		0.997452
91	33	66			0.997452
354	11			88	0.923564
356	25			75	1.0
358		75	25		1.0
359	75		25		1.0
360		75	25		1.0
361	81		6		0.999943
368	71		28		1.0
469	86		13		1.0
470		86		13	1.0
518		91		8	0.999807
521	91			8	0.999807
527		88		3	0.999079
528		88		11	1.0
531		88	11		1.0
537			8	92	0.999718
543			92	8	0.999718
559	92	7			0.999602
562		7		92	0.999602
603		89		10	1.0
617			90	9	1.0
620	92	2		4	0.98868
621		7	92		0.999999
622		9		90	1.0
623	4		2	92	0.98868
629	94			5	0.997984
646			84	3	1.0
740	90		9		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain