SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23658

Length: 1379 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23658

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	High mobility group family n=1 Tax=Populus trichocarpa RepID=A9PB77_POPTR	-	-	2.0e-36	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	high mobility group family	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	71%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTD7

Fln msg:

Fln protein: MATNSSSKTNPPRQRKRVDVDPANLKRARDGSGFIKCDVCNKDVPVALSDMHDCKLEDKIWSNFDVSKEAKHADAQKAPEAKKTKKKSEEKPKKRTKAKKIKDPNQPKKPATAFFVFMDDFRKTYKEANPDAKGAAQVGKEGGVKWKSMSDEEKKPYLEKAAELKAEYDKAMSKYQQDLKDEATKSSGECEDEAAKSDGDGGDDDEGAKSSGDGETEEE*

Protein Length: 221

Fln nts: ATGGGGGAATGGGGGGGGTTTGAGCAAATCTTCCCGCAACATAAAATTTGAAATCCCCAATACCCTTGCCGGGATATAAGTCTTCTCCTTGTTCCTCAAATCACTTCATCTATCTGTACATTCCCAGGCATTTCATCAGCACAATTTCCTTGCGCGATTTCCTTCCATTGCTTGATACTATTCACAAGAAGA_-_ATGGCCACCAATTCATCTTCAAAAACTAATCCTCCGAGGCAGAGAAAAAGAGTAGACGTTGATCCGGCTAATTTGAAGCGAGCCAGAGATGGCAGTGGTTTCATTAAATGTGATGTCTGCAACAAAGACGTTCCTGTGGCACTTTCCGATATGCACGATTGCAAACTTGAAGATAAGATATGGTCTAACTTTGATGTCTCCAAAGAGGCCAAGCATGCAGATGCCCAGAAAGCACCTGAAGCGAAAAAAACAAAGAAGAAGTCGGAGGAGAAGCCAAAGAAACGCACAAAGGCGAAGAAAATTAAGGACCCTAACCAGCCAAAGAAGCCCGCTACAGCATTTTTTGTGTTCATGGATGATTTTAGGAAGACCTATAAGGAGGCTAATCCCGATGCCAAAGGTGCTGCCCAGGTTGGGAAGGAAGGGGGCGTGAAATGGAAGTCTATGTCAGACGAGGAGAAGAAGCCATACCTGGAAAAGGCTGCTGAACTAAAGGCTGAGTATGACAAAGCAATGTCTAAATATCAACAAGATCTCAAGGATGAAGCAACTAAGTCTAGTGGTGAGTGTGAGGACGAAGCAGCAAAATCTGATGGTGATGGTGGTGATGATGATGAGGGGGCTAAGTCCAGTGGGGATGGTGAAACTGAAGAGGAGTAA___GTGTGTCCATAAATTGCTGGACTTGATTAATTTAAGAAGATAATTTTGTGAGGGCTTCATGGGTGTAATATTGTAGTGGATGCCTTGGGGCATGTACGGAGTTTTGATCAAATGTCATGAGGTGGCAAATCTCTAAAATCGCATCTAATTGGGGTCACACGACTAATGTATATTGATGTGGCATGGGGTGTCATGGTCTGAAATGTTCCACTTCCTATGTGGGCTATGGGTTGACATTGCACATAAATGATATGATTTGAGGAAGGCACATTGAAATTTCATGATCTGAAGTGCATAACACATGGTCAATGGATATGCTATTTGTTTTGGTAAACTATAGAATATTACATGGAGATTGATGTGGTGTGCACATTAGGTCTTGTTATGCCCCACATTTTCTGTTGGCTATGGGTTGACAATGCAAATTATTTGAGTAGTATAAGTTTTTCTCACATTTTAAACTGCATAGCAAATGAATGCCGAATGTGTTATCGTTTACCTAATATTGCATCAGAGTGCTTATTCTT

Fln Alignment:

sp_v1.1_unigene23658___MATNSSSKTNPPRQRKRVDVDPANLKRARDGSGFIKCDVCNKDVPVALSDMHDCKLEDKIWSNFDVSKEAKHADAQXXXXXXXXXXXXXXXXXXXXXXXXXX-DPNQPKKPATAFFVFMDDFRKTYKEANPDAKGAAQVGKEGGVKWKSMSDEEKKPYLEKAAELKAEYDKAMSKYQQDLKDEATKSS
A9NTD7_______________MATNASSKTNPPRQRKRVDVDPANLKRARDGSGFTKCDVCNKHIPVALSDMHDCQLEDKIRSNFDASKETKHADAQKPPEAKKAKKKSADEKPKKRTREKKARDPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSDEDKKPYLEKAAELKAEYEKAMSKYQQDLKDEAAKSS

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
59	85		14		0.993533
60	85			14	0.993533
61			14	85	0.993533
65		75	12	12	0.975346
67		12	12	75	0.975346
69		87		12	0.992554
70		75	12	12	0.975346
71	12		87		0.992554
72		12	75	12	0.975346
73		25	75		1.0
74	87			12	0.992554
76	87		12		0.992554
77			12	87	0.992554
78	87	12			0.992554
79	87			12	0.992554
83	12			87	0.992554
84		50		50	1.0
85		50	42		1.0
88		50	50		1.0
90			42	50	1.0
91	42		50	7	1.0
92		50		50	1.0
93		50		50	1.0
94		50		50	1.0
95		57		42	1.0
96	7		42	50	1.0
97	7	50	35	7	1.0
98	50	35			1.0
99	50			35	1.0
100	57		42		1.0
106		50		50	1.0
107	21	50			1.0
141	68		31		1.0
709	75			25	1.0
755		12		87	0.993502
773		42		57	1.0
785	50	50			1.0
812		20		80	0.995493
1167		14		85	0.993533
1189	33		66		0.997452
1190	33		66		0.997452
1191			33	66	0.997452
1192	66		33		0.997452
1235	85			14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
798	809	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain