SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23650

Length: 2246 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23650
ATGGGGCCACGCCGACTTCCTCTTGGGTATTTCGAAAACCCCGACTCTTGGGTATTAGCTAAACTCGCCCGCTTTTCTTCCCTTACACATCTCTCGTGAGCTATTGTCGCAAATTTTAGCTCTTCCTACTGGTTTCTTTCCACCGTCTTCGTTAGTCCTGGCCGCTAGAGGGACTAGAGACGGGACCATCAATGGCATATAAATCAAACACCAAAAACCACATTTAACTTCCATTTTTTACTGCTTAAATTTGTTGTGTTTTCTGAAGATTAAAACTAAAGGACAAATTCAAGCACAGTAAACTTGCTTCAGCGTATCAAATTTCTCCAAATTTGCAGCAATCTCCAGTTTATTTTCAATCTCTGTTCATAGGTCACCAGCTTGCTCGGTTCATCCGCTGCATCTTTCGACGCAGAAGGCCGAAAATGGCCACACTCGCAGACTCATTTTTGGCTGATCTTGAAGACTTATCAGATAATGATATGCCCCTAGAAGATGAAGAGAATGACGACGTAGGGGAGGAGGCTGAGAATGTTGATGATGACGTGGCTGATGTGGAAACTCTTAACTATGATGATTTGGACAGCGTTTCAAAGCTACAAAAGAGCCAGCGTTATCTGGATATCATGCAGAAAGTTGAAGAAGCTTTGCAAAATGGATCTGAGATTACTAGAAATGGGATAGTCTTGGAGGATGAACCAGAGTATCAACTGATTGTTGATTGTAATGCCTTGTCAGTTGATATTGAGAATGAAATTGTTATCATTCACAACTTCATTCGTGACAAATATAGGCTGAAGTTTCCTGAGTTAGAATCTCTTGTACACCATCCAATTGATTATGCTCGAGTTGTAAAGAAAATTGGAAATGAGATCGATTTAACTCTGGTTGATCTTGAGGGTCTTTTACCTTCGGCAATCATTATGGTTGTTTCTGTCACTGCATCTACCACTAGTGGTAAGCCTCTATCAGAAGAAAACTTGCAAAAGACTTTAGATGCTTGTGATAGAGCGCTTGCACTTGATGCAGCAAAAAAGAAGGTTTTGGATTTTGTTGAGAGTAGGATGGGATACATTGCCCCCAATTTGTCTGCTATTGCAGGGAGTGCGGTTGCAGCGAAATTGATGGGTACTGCAGGGGGTCTCTCTTCACTGGCTAAAATGCCAGCTTGTAATGTGCAGCTTCTAGGTGCAAAGAAAAAGAATTTGGCAGGATTTTCAACAGCGACTTCACAGTTTCGTGTTGGATACCTTGAACAAACAGAGATTTTCCAGAGCACGCCACCTGCTTTGAGAATGCGTGCATGTCGATTGTTAGCTGCAAAGTCAACACTTGCAGCTCGGGTGGATTCTACAAGAGGTGACTCTACTGGAAAAACTGGCAGAAACCTAAGAGAGGAAATACGCAAGAAAATAGAAAAGTGGCAGGAGCCGCCACCTGCAAAGCAGCCAAAGCCACTGCCAGTTCCAGATTCTGAACCCAAAAAGAAGCGAGGTGGTCGCAGGCTAAGAAAGATGAAAGAAAGGTATGCTGTAACAGACATGCGGAAGCTTGCAAATCGGATGCAATTTGGTGTACCTGAAGAGAGTTCTTTAGGAGATGGGTTGGGGGAAGGTTATGGTATGTTGGGCCAAGCTGGAAGTGGAAAATTACGAGTATCTGTTGGCCAAAGTAAGCTTGCAGCTAAAGTGGCAAAAAGATTTAAGGAGAAGAACTATGGAAGCAGTGGTGCAACATCAGGGTTGACCTCGAGTCTGGCATTTACACCTGTGCAGGGGATTGAACTTACAAACCCACAGGCTCATGGATCTCACCTTGGGAGTGGCATACAAAGTACCTACTTTTCAGAAACAGGAACATTTTCAAAGATCAAAAGGACATGAGAGCATATTAACGGCGGCAGTTTGAAGTCGATTATTTTTGCTGTCTTTTTTTTTTGGGAGATGTTAATTTTTAAGTTTTTAGCTATGAATATTTCCCAACACTGCATGCCAAATTTTAGTTTGTTAAATCATAAATGCAAAGAATATGTATCTACAAGGCTAAACAAGCTTCAACTGCTTCACAGTTCGAAGATGTAATCTATCAGTGGGTTAAGATATAACATGTATCTGCCAATGGATTATATTTTTTTCAGTTTTCTCGGTTTTTTAATACTTGTGAAGATGCTGGGGAAGAGAGTGATTTTACGAACTGTTTATTTGTAATTGATTTAATAATATGACAACTCTATCGAATCAGCCAGC

Ace file of the UniGene sp_v1.1_unigene23650

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U4/U6 small nuclear ribonucleoprotein Prp31, putative	-	-	67%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	85%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain	IPR002687	-	87%
Blast2go	NOSIC	IPR012976	-	87%
Blast2go	Prp31 C-terminal	IPR019175	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GR58

Fln msg:

Fln protein: MATLADSFLADLEDLSDNDMPLEDEENDDVGEEAENVDDDVADVETLNYDDLDSVSKLQKSQRYLDIMQKVEEALQNGSEITRNGIVLEDEPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLSEENLQKTLDACDRALALDAAKKKVLDFVESRMGYIAPNLSAIAGSAVAAKLMGTAGGLSSLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPALRMRACRLLAAKSTLAARVDSTRGDSTGKTGRNLREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKEKNYGSSGATSGLTSSLAFTPVQGIELTNPQAHGSHLGSGIQSTYFSETGTFSKIKRT*

Protein Length: 487

Fln nts: ATGGGGCCACGCCGACTTCCTCTTGGGTATTTCGAAAACCCCGACTCTTGGGTATTAGCTAAACTCGCCCGCTTTTCTTCCCTTACACATCTCTCGTGAGCTATTGTCGCAAATTTTAGCTCTTCCTACTGGTTTCTTTCCACCGTCTTCGTTAGTCCTGGCCGCTAGAGGGACTAGAGACGGGACCATCAATGGCATATAAATCAAACACCAAAAACCACATTTAACTTCCATTTTTTACTGCTTAAATTTGTTGTGTTTTCTGAAGATTAAAACTAAAGGACAAATTCAAGCACAGTAAACTTGCTTCAGCGTATCAAATTTCTCCAAATTTGCAGCAATCTCCAGTTTATTTTCAATCTCTGTTCATAGGTCACCAGCTTGCTCGGTTCATCCGCTGCATCTTTCGACGCAGAAGGCCGAAA_-_ATGGCCACACTCGCAGACTCATTTTTGGCTGATCTTGAAGACTTATCAGATAATGATATGCCCCTAGAAGATGAAGAGAATGACGACGTAGGGGAGGAGGCTGAGAATGTTGATGATGACGTGGCTGATGTGGAAACTCTTAACTATGATGATTTGGACAGCGTTTCAAAGCTACAAAAGAGCCAGCGTTATCTGGATATCATGCAGAAAGTTGAAGAAGCTTTGCAAAATGGATCTGAGATTACTAGAAATGGGATAGTCTTGGAGGATGAACCAGAGTATCAACTGATTGTTGATTGTAATGCCTTGTCAGTTGATATTGAGAATGAAATTGTTATCATTCACAACTTCATTCGTGACAAATATAGGCTGAAGTTTCCTGAGTTAGAATCTCTTGTACACCATCCAATTGATTATGCTCGAGTTGTAAAGAAAATTGGAAATGAGATCGATTTAACTCTGGTTGATCTTGAGGGTCTTTTACCTTCGGCAATCATTATGGTTGTTTCTGTCACTGCATCTACCACTAGTGGTAAGCCTCTATCAGAAGAAAACTTGCAAAAGACTTTAGATGCTTGTGATAGAGCGCTTGCACTTGATGCAGCAAAAAAGAAGGTTTTGGATTTTGTTGAGAGTAGGATGGGATACATTGCCCCCAATTTGTCTGCTATTGCAGGGAGTGCGGTTGCAGCGAAATTGATGGGTACTGCAGGGGGTCTCTCTTCACTGGCTAAAATGCCAGCTTGTAATGTGCAGCTTCTAGGTGCAAAGAAAAAGAATTTGGCAGGATTTTCAACAGCGACTTCACAGTTTCGTGTTGGATACCTTGAACAAACAGAGATTTTCCAGAGCACGCCACCTGCTTTGAGAATGCGTGCATGTCGATTGTTAGCTGCAAAGTCAACACTTGCAGCTCGGGTGGATTCTACAAGAGGTGACTCTACTGGAAAAACTGGCAGAAACCTAAGAGAGGAAATACGCAAGAAAATAGAAAAGTGGCAGGAGCCGCCACCTGCAAAGCAGCCAAAGCCACTGCCAGTTCCAGATTCTGAACCCAAAAAGAAGCGAGGTGGTCGCAGGCTAAGAAAGATGAAAGAAAGGTATGCTGTAACAGACATGCGGAAGCTTGCAAATCGGATGCAATTTGGTGTACCTGAAGAGAGTTCTTTAGGAGATGGGTTGGGGGAAGGTTATGGTATGTTGGGCCAAGCTGGAAGTGGAAAATTACGAGTATCTGTTGGCCAAAGTAAGCTTGCAGCTAAAGTGGCAAAAAGATTTAAGGAGAAGAACTATGGAAGCAGTGGTGCAACATCAGGGTTGACCTCGAGTCTGGCATTTACACCTGTGCAGGGGATTGAACTTACAAACCCACAGGCTCATGGATCTCACCTTGGGAGTGGCATACAAAGTACCTACTTTTCAGAAACAGGAACATTTTCAAAGATCAAAAGGACATGA___GAGCATATTAACGGCGGCAGTTTGAAGTCGATTATTTTTGCTGTCTTTTTTTTTTGGGAGATGTTAATTTTTAAGTTTTTAGCTATGAATATTTCCCAACACTGCATGCCAAATTTTAGTTTGTTAAATCATAAATGCAAAGAATATGTATCTACAAGGCTAAACAAGCTTCAACTGCTTCACAGTTCGAAGATGTAATCTATCAGTGGGTTAAGATATAACATGTATCTGCCAATGGATTATATTTTTTTCAGTTTTCTCGGTTTTTTAATACTTGTGAAGATGCTGGGGAAGAGAGTGATTTTACGAACTGTTTATTTGTAATTGATTTAATAATATGACAACTCTATCGAATCAGCCAGC

Fln Alignment:

sp_v1.1_unigene23650___MATLADSFLADLEDLSDNDMPLXXXXXXXXXXXXXXXXXXXXXXX-TLNYDDLDSVSKLQKSQRYLDIMQKVEEALQNGSEITRNGIVLEDEPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLSEENLQKTXXXXXXXXXXXXXXXXXXXFVESRMGYIAPNLSAIAGSAVAAKLMGTAGGLSSLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPXXXXXXXXXXXXKSTLAARVDSTRGDSTGKTGRNLREEIRKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMQFGVPEESSXXXXXXXXXXXXXXXXSGKLRVSVGQSKLAAKVAKRFKEKNYXXXXXXXXXXXXXXFTPVQGIELTNPQAHGSHLGSGIQSTYFSETGTFSKIKRT
B9GR58_______________MATLADSFLADLDELSDNDADIVDEDDDVEAGNMEEDVDGDLADIEALNYDDLDSVSKLQKTQRFNDIMQKVEDALQKGSDVQDHGMVLEDDPEYQLIVNCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDMEGLIPAAIRMVISVTASTTSGKPLPEEVLQKTIDACNRALALDSAKKKVLDFVETRMGYIAPNLSAIVGSAVAAKLMGMAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEVFQSTPPSLRMRAGRLLAAKSTLAARVDSTRGDPSGNTGRTLREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSIGQSKLAAKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSENGTFSKIKRT

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
276		75		25	1.0
303		75	25		1.0
340	45		54		1.0
342	63			36	1.0
377	11	88			0.923564
380	11		88		0.923564
986	30		70		1.0
1093		85		14	0.993533
1119	85		14		0.993533
1136	66		33		1.0
1226	23		76		1.0
1229	23			76	1.0
1337	78			21	1.0
1418	76		23		1.0
1609		7	64	28	1.0
1610	7	28	64		1.0
1611	28	7	64		1.0
1612	64	28		7	1.0
1613	64	7		28	1.0
1614	7	28	64		1.0
1615	28		71		1.0
1644		11	88		0.999952
1648	88	11			0.999952
1702		7		92	0.999602
1703	6			93	0.999453
1776	12		87		1.0
1898		81		18	1.0
1913	23		76		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain