SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23644

Length: 1378 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23644

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-5 exonuclease, putative	-	-	6.0e-37	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	3 -5 exonuclease	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	3'-5' exonuclease domain	IPR002562	-	0.0	62%
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1U4

Fln msg: your sequence is longer than subject: 301 - 204

Fln protein: MAEAEAGIIPNTNTTCTEVQFKDKSIQTSVTDDGPAVDNWVSQQDPAVDNWVSRQDPAVDNWVSPQDPAVDNWVSQQDPTVDNWVSPQDPAVDNWVSQQTCQEAGTDTNTTYTEVHFKEKSIQTTVTSDGSVVENWVNQQTGQEIVGFDLEWRPNFQKGWENDTALLQLCTDNGCLIIQMLFLNFIPEALVRFLKDPGVKLVGVGIRHDVEKLMCDHGLECGGQIDLGALAAEKLERRKLKQAGLKDLAMEVLGLRLSKSKSISMSNWAWAILQYRQIQYACIDAYVSLAIGKKLLKSEN*

Protein Length: 302

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGATGGAACTATGAGTGGGAACACTGGTTCCTCCCTGTTCGTCCATGACTCCGGACAGCTCATCATAGGGAACAAATATTTGCTTATAAATACCTATAAGGTCCGAAGATAGAGGGCTAGCCTCTGTCAGCCATCTGATACATCAATACCAACTTAATCCGGCCTGCGCGCAAGACAGCTTGAACTATACTCGA_-_ATGGCAGAAGCAGAGGCAGGAATAATTCCAAATACAAATACCACCTGCACTGAGGTCCAGTTCAAGGATAAATCTATACAAACGAGTGTCACAGATGACGGTCCCGCTGTAGACAACTGGGTTAGTCAGCAAGATCCCGCTGTAGACAACTGGGTTAGTCGGCAAGATCCCGCTGTAGACAACTGGGTTAGTCCGCAAGATCCCGCTGTAGACAACTGGGTTAGTCAGCAAGATCCCACTGTAGACAACTGGGTTAGTCCGCAAGATCCCGCTGTAGACAACTGGGTTAGTCAGCAAACATGCCAGGAAGCAGGAACAGATACAAATACGACCTATACTGAGGTCCACTTCAAGGAAAAATCCATACAAACGACAGTTACAAGCGACGGTAGCGTTGTAGAGAATTGGGTTAATCAGCAAACAGGGCAGGAAATTGTAGGGTTTGATCTGGAATGGCGGCCCAATTTTCAAAAGGGATGGGAGAACGACACCGCCTTGCTCCAGCTTTGTACTGACAATGGCTGCCTGATTATTCAGATGTTGTTTCTGAATTTTATTCCGGAAGCCCTGGTTAGGTTTTTGAAAGATCCGGGAGTGAAACTAGTAGGTGTGGGTATTAGGCATGACGTGGAGAAGCTGATGTGTGATCACGGTTTGGAATGTGGAGGTCAGATCGATCTTGGTGCCTTGGCAGCCGAAAAGCTGGAGAGGCGGAAACTCAAGCAGGCCGGGCTTAAGGATTTGGCTATGGAGGTTCTGGGCTTACGCCTTTCAAAGTCAAAAAGTATTTCTATGAGCAATTGGGCATGGGCAATTCTACAGTATAGGCAGATTCAGTATGCTTGCATCGATGCCTACGTTTCTCTTGCGATCGGTAAGAAACTCTTGAAGTCTGAAAACTGA___CGTTGTCTTGTAGGGTTTATTCATAAAGAAACCAGACTTGTTTTCCCCATATTAAGTGGCCCTGGGCAAGACGCTAGATGAATTGGGTTCGGAATTTTAAGGCATAGGATTTTTATTGTATGCTTCCCTTTTTCTGATTGACTGGGATTCAATATGGTATTTGTATATATGTGAATAGGGCATACAATTCTCTGCAATGTTATTTTCTTCGTTAACTGATTGATCGATGAATGAGTTAGTCGTTAACTTCTTTATAGAA

Fln Alignment:

sp_v1.1_unigene23644___MAEAEAGIIPNTNTTCTEVQFKDKSIQTSVTDDGPAVDNWVSQQ
A9P1U4_______________MAGAAAGIVTNTNTTCTEVHFAEKSIQTTVTDDGHVVENWVNQQ

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
137	60		40		1.0
138			80	20	0.995493
142			20	80	0.995493
143	80		20		0.995493
210		20		80	0.995493
257		16		83	0.994512
373		16		83	0.994512
633		83		16	0.994512
952			21	78	1.0
954	78	21			1.0
955	78		21		1.0
956			78	21	1.0
961			25	75	1.0
963		25	75		1.0
964		75		25	1.0
965			25	75	1.0
966	75			25	1.0
967		22	2	75	1.0
968	22		77		1.0
969	2	22	75		1.0
970	75		2	22	1.0
971		22	77		1.0
972	19		75		1.0
974			61	38	1.0
1131			41	58	1.0
1228			28	71	1.0
1332		80		20	0.995493
1334		25		75	0.996473
1335		25		75	0.996473
1347		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain