SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23642

Length: 949 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene23642 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat-shock protein, putative	-	-	2.0e-36	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp20	IPR002068	-	0.0	71%
Blast2go	HSP20-like chaperone	IPR008978	-	0.0	71%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
421		10		90	0.90298
422	10		90		0.90298
423	90			10	0.90298
425		90	10		0.90298
427		10		90	0.90298
428	10	90			0.90298
429		10	90		0.90298
431	10		90		0.90298
516	14		85		0.993533
525	16		83		0.994512
566	25		75		0.996473
656	75	25			0.996473
657	75	25			0.996473
658	75	25			0.996473
659	20		80		0.995493
687		25		75	0.996473
772		50		50	1.0
786	83	16			0.994512
789			16	83	0.994512
790		16		83	0.994512
791	83	16			0.994512
798		16		83	0.994512
799	16		83		0.994512
803		16		83	0.994512
877	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain