SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23629

Length: 1752 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23629

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64402_PINRA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	endo- -beta-	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	0.0	81%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 9	IPR001701	-	81%
Blast2go	Six-hairpin glycosidase-like	IPR008928	-	81%
Blast2go	Six-hairpin glycosidase	IPR012341	-	81%
Blast2go	Glycoside hydrolase, family 9, active site	IPR018221	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUH0

Fln msg: your sequence is shorter than subject: 443 - 514

Fln protein: VVTLAVVTLAVTQYYIALQVDLTGGYYDAGDNVKFGLPMAFTTTMLSWSVLEFGEYMGDDLDHAKTAIRWATDYLLKAAAHPGVLYVQVADPNMDHKCWERPEDMDTPRNVYKIDAEHPGSDVAAETAAALAAASMIFSTTDRTYSQLLLQTATQVFDFADKHRGTYSDSLQSEVCPFYCSYSGYHDELLWGAAWLQKASGSVSYLTYIQSNGQTFGADDNVNLFSWDEKHAGTRVLLAKQVLTENSKSLEVYKGHADNFICSLLPGTPSSQAQYTPGGLLFEMSDSNLQYVTSTTFLLFTYAKYLSVSNQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIFNHPQKIYCNDGFQSLYNNGPNPNILVGAVVGGPDNNDRFSDDRNDYAHSEPTTYINAPFVGCLAYLAQFGSSF*

Protein Length: 444

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAATATTACATTGCATTGCAGGTGGATTTGACGGGAGGATATTACGACGCAGGAGACAATGTGAAGTTCGGTCTCCCAATGGCTTTCACGACTACCATGCTGTCATGGAGCGTTTTGGAATTCGGAGAGTACATGGGAGATGACCTCGACCATGCAAAAACTGCCATCCGTTGGGCCACAGATTACCTACTTAAAGCCGCTGCACATCCCGGTGTTCTTTACGTGCAGGTAGCCGATCCGAACATGGATCACAAGTGCTGGGAGAGGCCCGAAGACATGGACACACCTCGCAATGTCTATAAAATAGATGCTGAACATCCAGGCTCTGACGTTGCCGCAGAAACGGCTGCAGCTCTTGCAGCCGCGTCCATGATATTCAGCACAACGGACCGTACTTATTCTCAGCTTCTCCTTCAAACTGCAACGCAGGTATTTGATTTCGCGGATAAACACAGAGGCACTTACAGTGACTCCCTCCAGTCGGAAGTTTGCCCATTCTATTGCTCTTACTCAGGATATCATGACGAATTACTGTGGGGAGCAGCATGGTTGCAAAAAGCCTCAGGGAGTGTATCATATCTCACCTACATTCAATCAAATGGCCAGACTTTTGGCGCGGACGACAATGTCAATTTATTCAGCTGGGACGAAAAGCATGCAGGAACCAGAGTTCTTTTGGCTAAGCAAGTTCTGACAGAAAATTCCAAGTCCCTTGAGGTATACAAGGGCCATGCTGACAACTTCATTTGCTCTCTCTTGCCCGGAACACCATCCTCTCAGGCGCAGTACACACCAGGGGGGCTACTCTTCGAGATGAGTGATAGTAATTTGCAATATGTGACATCCACAACTTTCCTGCTTTTTACTTATGCAAAATACTTAAGCGTTTCCAACCAAGTGGTGAGATGCGGGAACATCATAGCTACTCCAACCCGGATACGTACTCTTGCGAAAAGACAGGTGGACTATATACTGGGAGACAACCCTCTGGGAATGTCATACATGGTGGGCTACGGTGCCAAGTTTCCAGAACGTATACATCACAGGGGTTCGTCGTTGCCGTCCATATTCAACCATCCCCAAAAGATTTACTGCAACGATGGCTTCCAGTCGTTGTATAACAACGGTCCCAACCCAAACATTCTTGTCGGTGCTGTAGTTGGAGGACCCGACAACAATGACCGCTTTTCCGACGACCGCAATGACTATGCGCACTCTGAACCCACCACTTATATCAATGCTCCATTCGTCGGTTGCCTCGCCTATTTGGCACAGTTCGGATCTTCGTTTTAG___TAGCTGCAGAATTCTATTCTCCCGTCATATTGCCATATTGTTCCACTTCCCAGTAACAATATCCTATAAGGTCGTAATTTCTCTATATGCTTCTGCGGATATAAAATTTTCGCCCTCTGCATCTGTTTTTTGTTTCCTTTGGCAGGATGGAGGTGATCTCCATCATTACCTTCACCTATTAGTTGTAGTAAAAAATGGTTTGACCGACAAGCCGGTGGATCCAATTTAGAGTCCCTCAGTTTCATGTAATCTCACACTAATATTTGCAGTCATATTTGCAATGTTTCTATGAACTTATGTTTAATTATATCCGCATGGTGGAGATTTCAATATTTCTTTCAATTCCATGTCACACTTATATTTGCGGTCATATTTGGAAAGTTTGTATGAACTTACGTTTAATTATATCCCCATGGTTGAGA

Fln Alignment:

sp_v1.1_unigene23629___ALQVDLTGGYYDAGDNVKFGLPMAFTTTMLSWSVLEFGEYMGDDLDHAKTAIRWATDYLLKAAAHPGVLYVQVADPNMDHKCWERPEDMDTPRNVYKIDAEHPGSDVXXXXXXXXXXXSMIFSTTDRTYSQLLLQTATQVFDFADKHRGTYSDSLQSEVCPFYCSYSGYHDELLWGAAWLQKASGSVSYLTYIQSNGQTFGADDNVNLFSWDEKHAGTRVLLAKQVLTENSKSLEVYKGHADNFICSLLPGTPSSQAQYTPGGLLFEMSDSNLQYVTSTTFLLFTYAKYLSVSNQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIFNHPQKIYCNDGFQSLYNNGPNPNILVGAVVGGPXXXXXXXXXXXXYAHSEPTTYINAPFVGCLAYLA
A9NUH0_______________AEHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHARAAIRWATDYLLKATAHPGVIYVQVGDPNMDHKCWERPEDMDTPRNVYKIDAEHPGSDIAAETAAALAAASMVFRATDPTYSGHLLQTAMRVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNVSYISYIQSNGQNLGAEDNVNIFSWDEKHAGARVLLAKEVLLRNSKSLQEYRGHADNFICSLLPGTQNSQAQYTPGGLLFKMSDNNLQYVTSTTFLLFTYAKYLTVSKQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPEHVHHRGSSLPSIYQHPRIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDRFSDERNDYAHSEPTTYINAPLVGSLAYLA

SNPs (tot: 154)

Position	A %	C %	G %	T %	Probability
16		80		20	0.995493
21		20	80		0.995493
23		20	80		0.995493
25		80	20		0.995493
26		80		20	0.995493
29	20		80		0.995493
30	20		80		0.995493
34			80	20	0.995493
36		80	20		0.995493
38		80		20	0.995493
40		80		20	0.995493
41	80	20			0.995493
63			80	20	0.995493
90	87			12	0.992554
91		12	87		0.992554
93	87			12	0.992554
97	87	12			0.992554
98	87			12	0.992554
103	87	12			0.992554
105		12	87		0.992554
107		12		87	0.992554
108	12	87			0.992554
112		50		50	1.0
222		40		60	1.0
259	13			86	0.999973
260	87	12			0.999964
261		88	11		0.999952
264	11	47	41		1.0
273		70	29		1.0
280	82	5			0.999919
282		55		38	1.0
344	11			88	0.999952
345	88			11	0.999952
384			33	66	1.0
402		69		30	1.0
408	25	75			1.0
409	66			33	1.0
412	66		33		1.0
456	80			20	0.999996
487	85			14	0.993533
488	85	14			0.993533
489	85		14		0.993533
492		85	14		0.993533
493	85			14	0.993533
497			85	14	0.993533
498		85	14		0.993533
499	85		14		0.993533
501	14			85	0.993533
502			14	85	0.993533
503	85		14		0.993533
505	85	14			0.993533
522		20	80		0.995493
528			20	80	0.995493
552	80		20		0.995493
601		80		20	0.995493
610		20		80	0.995493
648	25	75			0.996473
650		25		75	0.996473
658			75	25	0.996473
661		75	25		0.996473
667		25		75	0.996473
694	33		66		0.997452
727		66	33		0.997452
761	33			66	0.997452
789		25		75	0.996473
807	75			25	0.996473
808	75			25	0.996473
810	75		25		0.996473
812	25	75			0.996473
813	75		25		0.996473
815	25	75			0.996473
816		33	33	33	0.997753
818		66	33		0.997452
819	33			66	0.997452
949		33		66	0.997452
953			66	33	0.997452
956	66	33			0.997452
958	66			33	0.997452
960		66	33		0.997452
961	66		33		0.997452
962		33		66	0.997452
963	66			33	0.997452
965		66		33	0.997452
966		33		66	0.997452
971	33	66			0.997452
985	75			25	0.996473
993	25		75		0.996473
1053		75		25	0.996473
1059		25		75	0.996473
1094	14	85			0.993533
1095		14	85		0.993533
1100			14	85	0.993533
1101	14		85		0.993533
1103		85		14	0.993533
1104			71	28	1.0
1106		85	14		0.993533
1107		85	14		0.993533
1108	71	14		14	0.984337
1109		14		85	0.993533
1111			14	85	0.993533
1112	14			85	0.993533
1115	85			14	0.993533
1117	14	85			0.993533
1121		87	12		0.992554
1122		87		12	0.992554
1124	87		12		0.992554
1125	87			12	0.992554
1126	87		12		0.992554
1128		12	87		0.992554
1129	87	12			0.992554
1131	12			87	0.992554
1132			12	87	0.992554
1133	75	12	12		0.975346
1137		87		12	0.992554
1138	87	12			0.992554
1142	87			12	0.992554
1143		12		87	0.992554
1144	12		87		0.992554
1161		12		87	0.992554
1163	87		12		0.992554
1167		87		12	0.992554
1178		90	10		0.90298
1179	90			10	0.90298
1180	90	10			0.90298
1181	90		10		0.90298
1182		90		10	0.90298
1183	90		10		0.90298
1184	10			90	0.90298
1185		10		90	0.90298
1188			10	90	0.90298
1190			10	90	0.90298
1192			90	10	0.90298
1195	10		90		0.90298
1199		10		90	0.90298
1200	90		10		0.90298
1216	90	10			0.90298
1249			15	84	0.999986
1250	84			15	0.999986
1251		15		84	0.999986
1253		84		15	0.999986
1255	15	84			0.999986
1256	84	15			0.999986
1259		84		15	0.999986
1260			15	84	0.999986
1262	84	15			0.999986
1263	84			15	0.999986
1264		84	15		0.999986
1265		85		14	0.999981
1269		78		21	1.0
1511	37	62			1.0
1533		41	58		1.0
1625	16			83	0.994512
1626			83	16	0.994512
1629		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain