SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23626

Length: 1388 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23626

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pco089793; LOC100281836; K07023 putative hydrolases of HD superfamily	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	metal-dependent phosphohydrolase hd domain-containing protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Blast2go	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	84%
Blast2go	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	84%
Blast2go	HD domain	IPR023279	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTN1

Fln msg: your sequence is longer than subject: 259 - 197

Fln protein: MRRDLWTVISELPNNKLPCTERTAIGMNRIQSVPTLLSCSRVIVPSLAGIRSFRRVGVCKAMAGIDGAASQGVDSPSPSSAIDFLTLCQRLKTTKRTGWVYRGIRDPESIADHMYRMAAMALIAVDIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGVPKEEKNRRERKALDEMCGILGGGSIADEIYQLWNEYEENSSPEAKIVKDFDKVEMILQALEYESAQDKNLDEFFKSTAGKFQTDLGKAWAAEIVSRRNRS*

Protein Length: 260

Fln nts: _-_ATGCGTCGTGACCTATGGACTGTCATCTCAGAACTTCCCAACAATAAACTACCTTGCACGGAGCGGACAGCAATCGGAATGAATAGAATACAAAGCGTCCCCACTCTGCTATCCTGCTCTCGCGTTATTGTACCTTCTCTCGCGGGAATTCGGTCCTTTCGAAGAGTAGGAGTTTGCAAGGCGATGGCGGGAATCGATGGCGCGGCTTCTCAAGGGGTGGATAGTCCTTCCCCCTCCTCGGCCATTGATTTTCTCACTCTCTGCCAGCGCCTCAAGACTACAAAACGAACTGGTTGGGTTTACCGTGGTATAAGGGATCCTGAATCTATTGCTGATCACATGTATCGGATGGCTGCCATGGCTCTAATTGCTGTGGATATTCCTGGTATCGACAGAGACAAGTGCATAAAGATGGCAATTGTCCATGACATTGCTGAAGCCATTGTTGGTGATATTACCCCTTCAGATGGCGTGCCTAAGGAAGAAAAAAACCGGAGAGAGAGGAAAGCTTTGGATGAAATGTGTGGAATCTTGGGTGGAGGATCGATAGCTGATGAAATATACCAGTTATGGAACGAGTATGAAGAGAATTCTTCTCCAGAAGCAAAAATTGTGAAAGATTTTGACAAGGTGGAAATGATTCTTCAAGCATTGGAATATGAAAGTGCCCAAGACAAGAATTTAGATGAGTTTTTCAAGTCAACAGCAGGAAAATTCCAAACTGATCTTGGCAAAGCATGGGCTGCTGAGATAGTTTCTAGGAGAAACAGAAGCTAA___CGACATGTGTGTAAATGATGTTATTCTTCCAAGGGAACTAAACTGTTTGGACTGTTAGACCTGTTTATTCATCTTCCAAGGTCATTCTTTATTTTCATAACCTCAAATAATTTTAAGGGGTTTATTTGAGGTCACAGATGCCTGCAACATCTCTTGACATGTTATTGTACCAGTTAGTCTGGATTAAAATAAAATCACTTCCATTTAGAAAATAAAGGAAGTTTGCATTCTGTTAGTCTAGAGGAATGTTGGAAATGAGGTGTCTTCTCTTTTTATCCTCTGTGATAATGGAGCCAATTTTAATCGGGTTACAAGCTGTGGGTGGAAAGGCATTGTATGATGTTTTTCCTTCAGTTCTTAGAGATGTTAACTTGCATGGCAATTAGCATTCTTCTTGTGGCACATTGAAAATAGTGAAGTTTGGTTTATGATTACGCATCTCAGTGAGTGTGTTGGGTATGAAGGGGCAACAAAGAGATCTAGATCAAGCAATGAGGGTTTGATTAACTAGATCAGATACAATGTTGTATGTAATTCCTCAGTTAGACCATTTTCCTAAGAAGGGAGCCCATGTAATTTTGGAATTTTAATGAAGAACTGTGATTAGGGTT

Fln Alignment:

sp_v1.1_unigene23626___MAGIDGAASQGVDSPSPSSAIDFLTLCQRLKTTKRTGWVYRGIRDPESIADHMYRMAAMALIAVDIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGVPKEEKNRRERKALDEMCGILGGGSIADEIYQLWNEYEENSSPEAKIVKDFDKVEMILQALEYESAQDKNLDEFFKSTAGKFQTDLGKAWAAEIVSRRNRS
A9NTN1_______________MAGIDGSTSHGVDGPSSSSAIDFLTLCQRLKTTKRTGWIYRGIRDPESIADHMYRMAAMALIAVDIPGINRDKCIKMAIVHDIAEAIVGDIAPSDGVPKEEKSRRERQALDEMCGILGGGLRADEIHQLWNDYEENSSPEAKIVKDFDKVEMILQALEYETAQGKNLDEFFQSTAGKFQTDLGKAWAAEIVSRRNRS

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
63		20	80		0.995493
66			80	20	0.995493
68	80		20		0.995493
70	80			20	0.995493
74	80	20			0.995493
111		81		18	0.999994
112			18	81	0.999994
113	81			18	0.999994
114		18	18	63	0.999997
115		81	18		0.999994
116		81		18	0.999994
118			81	18	0.999994
120	18			81	0.999994
121		81	18		0.999994
124	18		72		0.999994
126			81	18	0.999994
127		18		81	0.999994
128	18			81	0.999994
285	90	10			0.90298
286	90			10	0.90298
287	90			10	0.90298
288		90	10		0.90298
290	90	10			0.90298
291	90			10	0.90298
292		90	10		0.90298
294		10	90		0.90298
295	10		90		0.90298
296		10		90	0.90298
298		11	88		0.923564
299	11		88		0.923564
533	16	83			0.994512
547		83		16	0.994512
578		33		66	1.0
584		14		85	0.993533
586	85			14	0.993533
587	85	14			0.993533
589	85			14	0.993533
592	85	14			0.993533
598		85	14		0.993533
599			14	85	0.993533
601		85		14	0.993533
602	85		14		0.993533
603			85	14	0.993533
604	85	14			0.993533
608	85			14	0.993533
609	85	14			0.993533
674	85		14		0.993533
781	66		33		1.0
926	89	10			0.999919
999	86	13			1.0
1002		9		90	0.999842
1006	90	9			0.999842
1009		90	9		0.999842
1012		9		90	0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain