SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23587

Length: 2243 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23587
CGTCGTGACCTTGGCTGTCACTCATGTGCTTCAGATTTTTCTTACAGCGGAATTGATTGAATCAGCCGGAGGCGTTAGGGCTTTGACTGAGGTGAGGGCGCGGAGTCCGAGGAAGGAATCCGGACGTTTTCGTGTTTTGTTTGTATATAAATACGATCCAGGGATATAGAGTACTGTCAATATGCGGAGATTTGTAGCCGATAGATTTAGGAGGATAGCTGCCCAAGCAATGGCAAACAACTTTTCTTCATCTTCTAATGCTAACAAGAAATGTCTCGGGGGATATCCTTCTTCCCCGCTTACCCTCGAGACTATCAATCCCAAGGTTTTGAAATGTGAATATGCAGTTCGTGGAGCAATTGTTGCACAGGCCCAGAGGCTACAAGAGGAATTGCAAACAAAGCAATCTTCACTTCCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCTGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTATTGTCATCATAAATCCAGGAAATCCTACAGGTCAGGTTCTTTCAAAGGAAAATCAAGTGGAGATTGTGGAGTTTTGTAAGAATGAAGGTTTACTTCTCCTTGCTGATGAGGTTTATCAGGAAAACATTTATGCAGATAACAAGGAATTCCACTCTTTCAAAAAGATAGCGAGGAGCATGGGTTATGGTGAAAAGGACATTTCTCTTGTTTCTTTCCAGTCAATTTCCAAAGGTTATTATGGCGAGTGTGGAAAAAGAGGTGGATATATGGAGGTAACTGGAATTGACAACGATATCAAGGATCAACTGTATAAAGTGGCATCTGTGAATCTTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGCCAAGACCTTAGTGGATGCATTGAACCAGTTAGAAGGTGTTACCTGCAATGAAGCAGAAGGTGCCATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAAGCATATTTAAATATATGTTTACCCGTGCTTCAAGTTAAATCAAAAGTACTACGTGATATGAGTTGCATGAAACAGTGCTTATTTTATGTCGGGCAACATTTAAAACATTATCTATCCAAGCTCTCTCTCTCATAACAGAATTATTGCTGTTTCTTCAATAAACTGGGTTGATATCATGATATATTGGTATTCACATCAATTTCAACTAGTTTGCAGGTTGGTAGTGCTGCTGGATTCAAATCCAAGGTGATATTGTATTAATGATATGAATTTTATTGAGCATTTTGCAAAATATCACACTTTCTAGAAATTGTTTTTCATCTACTAAAGAATAGCATTGGTTGCAAGTTGGCACAACCCAACCAATGCCATGGAATAGTTGGAAGTTTTCTATAAAACTGAAGGTGCAGGTACAGTAACAAGTTATTTGTATTTTCCAAGTGAAATTCTAGGTGACATGTGAAGACCTCGGGCACTGAGTTACACTAGGCTTGATAATGGCTCGACT

Ace file of the UniGene sp_v1.1_unigene23587

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AlaAT1; AlaAT1 (ALANINE AMINOTRANSFERAS); ATP binding / L-alanine:2-oxoglutarate aminotransferase (EC:2.6.1.2); K00814 alanine transaminase [EC:2.6.1.2]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	alanine aminotransferase	-	-	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Alanine transaminase.	EC:2.6.1.2	-	0.0	78%

Source	KEGGs	Term	Identity
AutoFact	Alanine, aspartate and glutamate metabolism	00250	78%
AutoFact	Carbon fixation in photosynthetic organisms	00710	78%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	78%
AutoFact	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	87%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACH7

Fln msg: your sequence is longer than subject: 518 - 329

Fln protein: MRRFVADRFRRIAAQAMANNFSSSSNANKKCLGGYPSSPLTLETINPKVLKCEYAVRGAIVAQAQRLQEELQTKQSSLPFDEIIYCNIGNPQSLGQQPVTFFREVLALCDHPALLDKDETHGIFSSDSISRAWQILDGIPGRATGAYSHSQGIKALRDAIAAGIAERDGFPSNSEDLFLTDGASPGVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAIVIINPGNPTGQVLSKENQVEIVEFCKNEGLLLLADEVYQENIYADNKEFHSFKKIARSMGYGEKDISLVSFQSISKGYYGECGKRGGYMEVTGIDNDIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD*

Protein Length: 519

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGCTTCAGATTTTTCTTACAGCGGAATTGATTGAATCAGCCGGAGGCGTTAGGGCTTTGACTGAGGTGAGGGCGCGGAGTCCGAGGAAGGAATCCGGACGTTTTCGTGTTTTGTTTGTATATAAATACGATCCAGGGATATAGAGTACTGTCAAT_-_ATGCGGAGATTTGTAGCCGATAGATTTAGGAGGATAGCTGCCCAAGCAATGGCAAACAACTTTTCTTCATCTTCTAATGCTAACAAGAAATGTCTCGGGGGATATCCTTCTTCCCCGCTTACCCTCGAGACTATCAATCCCAAGGTTTTGAAATGTGAATATGCAGTTCGTGGAGCAATTGTTGCACAGGCCCAGAGGCTACAAGAGGAATTGCAAACAAAGCAATCTTCACTTCCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCTGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTATTGTCATCATAAATCCAGGAAATCCTACAGGTCAGGTTCTTTCAAAGGAAAATCAAGTGGAGATTGTGGAGTTTTGTAAGAATGAAGGTTTACTTCTCCTTGCTGATGAGGTTTATCAGGAAAACATTTATGCAGATAACAAGGAATTCCACTCTTTCAAAAAGATAGCGAGGAGCATGGGTTATGGTGAAAAGGACATTTCTCTTGTTTCTTTCCAGTCAATTTCCAAAGGTTATTATGGCGAGTGTGGAAAAAGAGGTGGATATATGGAGGTAACTGGAATTGACAACGATATCAAGGATCAACTGTATAAAGTGGCATCTGTGAATCTTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGCCAAGACCTTAGTGGATGCATTGAACCAGTTAGAAGGTGTTACCTGCAATGAAGCAGAAGGTGCCATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAA___GCATATTTAAATATATGTTTACCCGTGCTTCAAGTTAAATCAAAAGTACTACGTGATATGAGTTGCATGAAACAGTGCTTATTTTATGTCGGGCAACATTTAAAACATTATCTATCCAAGCTCTCTCTCTCATAACAGAATTATTGCTGTTTCTTCAATAAACTGGGTTGATATCATGATATATTGGTATTCACATCAATTTCAACTAGTTTGCAGGTTGGTAGTGCTGCTGGATTCAAATCCAAGGTGATATTGTATTAATGATATGAATTTTATTGAGCATTTTGCAAAATATCACACTTTCTAGAAATTGTTTTTCATCTACTAAAGAATAGCATTGGTTGCAAGTTGGCACAACCCAACCAATGCCATGGAATAGTTGGAAGTTTTCTATAAAACTGAAGGTGCAGGTACAGTAACAAGTTATTTGTATTTTCCAAGTGAAATTCTAGGTGACATGTGAAGACCTCGGGCACTGAGTTACACTAGGCTTGATAATGGCTCGACT

Fln Alignment:

sp_v1.1_unigene23587___MMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAIVIINPGNPTGQVLSKENQVEIVEFCKNEGLLLLADEVYQENIYADNKEFHSFKKIARSMGYGEKDISLVSFQSISKGYYGECGKRGGYMEVTGIDNDIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD
D5ACH7_______________MMMQLLIRSEKDGILCPIPQYPLYSASIALQGGTLVPYYLNEATGWGLEISEVKQQLEAARVRGIDVRAIVIINPGNPTGQVLSKENQEEIVQFCKNEGLVLLADEVYQENVYVDNKKFHSFKKIARSMGYGEKDICLVSFQSVSKGYYGECGRRGGYMEVTGFDNNIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFEMFFAERDGILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPRIHLPQQAIKAAEAVNMVPDAFYSQRLLEATGIVTVPGSGFGQVPGTWHFRSTILPPEDKIPTIVSRMTTFHQKFMEEFHD

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
265	11		88		0.923564
386	85			14	0.993533
406	80		20		0.999996
410			20	80	0.999996
412		80	20		0.999996
417	15	73	10		1.0
418		89	10		0.999919
419		27		72	1.0
421			11	88	0.999952
422			18	81	1.0
423		5	94		0.9982
424	89	10			1.0
425		10		89	1.0
426	2		86	10	1.0
427	78	5		15	1.0
428		10	84		1.0
429	94		5		0.9982
430		7		92	1.0
432	94	5			0.9982
433	5			94	0.9982
435		5		94	0.998397
645	5		94		0.998744
814	18		9	72	0.999994
816			18	81	0.999994
825			10	90	0.90298
826		90	10		0.90298
848		80		20	0.995493
892	83			16	0.994512
893	83	16			0.994512
1720	93		6		0.999364
1879	50		42		1.0
1880		46		46	1.0
1883	3	57			1.0
1935	88		12		1.0
2059		14		85	0.993533
2093	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain