SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23571

Length: 2402 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23571
CGTCGTGACCTTGGCTGTCACTCAATTTTGGGTTCTTTGTATTTGCTTTTGACTTGTCTAAACTACCGAGTGCTATATATCAGCAGGACTTGAGAGTGCATATCACTCATATTTACCAGTGAGCACTTTGCTGTATTTGGCTCACTTGCAGAATGGGATCATCCGCTCCAATGGTTTTGATCCACGCCATTACTCTCTCATGGCTGTGGTTAAGCATCTCTGCTTCTCATGTAGTGCATACTGTTAATACAGCAAAAACAAGTATTCAACAGCCATATCGCACAGCCTACCATTTTCAGCCTCAAAAGAACTGGATGAATGACCCAAATGGGCCCATGTTCTACAAGGGATTCTATCATCTGTTCTACCAGTACAATCCTGAAGGAGCGGTGTGGGGAAATATTGTCTGGGGTCATTCTGTTTCGAAGGATCTCATTAACTGGCATTCATTGGATCCTGCCATTGTTCCGAGCGAATGGTATGATATCAAGGGCTGCTGGTCCGGTTCTGCAACGTTGCTGCACGGAGACAAGCCTGTGATCCTCTACACAGGATGGGCCAATTCATCCCAACAGATGCAGAACATGGTTGTTCCTAAGGATGCCACTGATCCTCTGTTGAGGGAATGGGTAAAGATTCCTCAGAATCCTCTTTTGATTCCAGAATTTGGTATCAATGGGAGCGAATTCAGGGATCCCACCACTGGATGGCTTGGCCACGATGGAAAATGGAGGATTGTGGTTGGAAATAAGAGGAATCACAGAGGGGTGGCTCTGTTATACAGAAGCAAGGACTTCGTCCACTGGGTGAAGGCCAAGCATCCTCTGCATTCGTCGAAATTGACCGGAATGTGGGAATGTCTCTGACTTTTACCCTGTTCCTCTTTCTGGGAAAGAAGGGCTAGACACGTCAGCAGTGGGCTCCTCTCTTAAACACGTTTTGAAGGTGAGTTTGGACGATTACAAGTACGAGTATTATACAGTGGGAACCTACTTGCGGGACATGGATCGATACGTGCCAGACAATACCAGCAGTGATGATGAAAATGGATTGAGATATGACTATGGAAAATTCTATGCTTCGAAGACCTTTTTTGATCAATATAAGAATAGACGAATTCTGTGGGGTTGGATCAATGAATCTGACAGCGTCGCCGATGACGTCAGCAAAGGTTGGTCTGGTCTTCAGGCGGTTCCAAGAACGATCTGGCTAGACAGCGTCACTAGATCGCAGCTTTTGCAGTGGCCAGTTCCTGAAGTAGAATCCCTTCGTCGAAAGGAATATACAAACAAAGCATTGATCTCAGCAGTGGATCCGTTGTAGAAATTGCAGGCCTTAACGCTGCGCAGGTTGATGTGGAGGTCTCCTTTGATGTACCGAGGCTCGAAATCGCAGAGTTGGAAGAAGAGATGGGAGTAAATTTGACAGCTCAACAACTGTGCGGTCGGATGGGCTCAGCTGCGAGAACTGCTGGTGGCCCATTTGGGCTGTTTGTTTTGGCTTCCAAGGACTTGAATGAACGCACTGCTGTGTTTTTTCAGATCGTTCGCTATCGAAATGAATTGAAGTTATTAATGTGCAGTGACCAGAGCAGATCGTCTTTAAAGACAGACATTGATAAGACAACATATGGAGCTTTCGTGAATTATGTGGGTTCTTTCAAGGAGAAAAGCCTTTCATTGCGAGTCCTGGTTGATCATTCAATCGTGGAGAGCTTTGGAGAAGGGGGAAAGGTGTGCATAACGGCTCGAGTTTATCCCACCCTGGCAATAGACAAAGACGCCTATCTCTACGTCTTCAATAACGGCACATCCACTGTCACGGCCACCAAATTTACTGCCTGGGAAATGGCTTCCTCCAATCAAAGGCTTATGCACTAAAAAAATAATTTCTCCAATGCTTTGCCTATTCCAAATGGCTTCCTCCAATCAAAGGCTTATTGACTAAATAACTAATTTCTCCAATAGTTTGCCTATTCCAATCAAATATTTGCAATTTGTCACAAACTGGGAGAACCTTTTGGCGTGTCCCCTGGATGTTACTTGGTGCTGAGTTTTTGAATGTTTATTTATTGTCACTTGTTCCGTTTTCCTCGCGAAAAACAGGTTGCCTGCTCCAGATAAAGCGGCGTCGAATCTGCATGAAGCATCACCCCTTCATCGTTCAATTCATTGACGTGCATTTTGCTTTGGACTTTTTGTGCATGAATATAAATGGCGGCCCAATTTTCAAAGGTGGAAATTGAAAAAATAATGGAATCGGGAATCCGGGTCTTCCTATATGTTTATCGATGGGGCCACCTTCTAGATTTTGCCTCGATTGCAATGGGTATAGTTATTGTTATGATATGAAATACTTATTATATTGAATAAATTAATTTGTTTGGGTGAGGATCAACCATT

Ace file of the UniGene sp_v1.1_unigene23571

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell wall apoplastic invertase n=3 Tax=Vitis vinifera RepID=Q3L7K5_VITVI	-	-	64%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme CWINV1; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	achain crystal structure of a cell-wall invertase from arabidopsis thaliana in complex with sucrose	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	71%
Blast2go	Starch and sucrose metabolism	00500	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	0.0	71%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 32	IPR001362	-	71%
Blast2go	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	71%
Blast2go	Glycoside hydrolase, family 32, active site	IPR018053	-	71%
Blast2go	Glycosyl hydrolase family 43, five-bladed beta-propellor domain	IPR023296	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q43866

Fln msg: Overlapping hits, possible frame ERROR between 887 and 865,

Fln protein: MGSSAPMVLIHAITLSWLWLSISASHVVHTVNTAKTSIQQPYRTAYHFQPQKNWMNDPNGPMFYKGFYHLFYQYNPEGAVWGNIVWGHSVSKDLINWHSLDPAIVPSEWYDIKGCWSGSATLLHGDKPVILYTGWANSSQQMQNMVVPKDATDPLLREWVKIPQNPLLIPEFGINGSEFRDPTTGWLGHDGKWRIVVGNKRNHRGVALLYRSKDFVHWVKAKHPLHSSKLTGMWECLxxxxxxxxxGKEGLDTSAVGSSLKHVLKVSLDDYKYEYYTVGTYLRDMDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQYKNRRILWGWINESDSVADDVSKGWSGLQAVPRTIWLDSVTRSQLLQWPVPEVESLRRKEYTNKALISAVDPL*KLQALTLRRLMWRSPLMYRGSKSQSWKKRWE*I*QLNNCAVGWAQLRELLVAHLGCLFWLPRT*MNALLCFFRSFAIEMN*SY*CAVTRADRL*RQTLIRQHMELS*IMWVLSRRKAFHCESWLIIQSWRALEKGERCA*RLEFIPPWQ*TKTPISTSSITAHPLSRPPNLLPGKWLPPIKGLCTKKIISPMLCLFQMASSNQRLID*

Protein Length: 600

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGGGTTCTTTGTATTTGCTTTTGACTTGTCTAAACTACCGAGTGCTATATATCAGCAGGACTTGAGAGTGCATATCACTCATATTTACCAGTGAGCACTTTGCTGTATTTGGCTCACTTGCAGA_-_ATGGGATCATCCGCTCCAATGGTTTTGATCCACGCCATTACTCTCTCATGGCTGTGGTTAAGCATCTCTGCTTCTCATGTAGTGCATACTGTTAATACAGCAAAAACAAGTATTCAACAGCCATATCGCACAGCCTACCATTTTCAGCCTCAAAAGAACTGGATGAATGACCCAAATGGGCCCATGTTCTACAAGGGATTCTATCATCTGTTCTACCAGTACAATCCTGAAGGAGCGGTGTGGGGAAATATTGTCTGGGGTCATTCTGTTTCGAAGGATCTCATTAACTGGCATTCATTGGATCCTGCCATTGTTCCGAGCGAATGGTATGATATCAAGGGCTGCTGGTCCGGTTCTGCAACGTTGCTGCACGGAGACAAGCCTGTGATCCTCTACACAGGATGGGCCAATTCATCCCAACAGATGCAGAACATGGTTGTTCCTAAGGATGCCACTGATCCTCTGTTGAGGGAATGGGTAAAGATTCCTCAGAATCCTCTTTTGATTCCAGAATTTGGTATCAATGGGAGCGAATTCAGGGATCCCACCACTGGATGGCTTGGCCACGATGGAAAATGGAGGATTGTGGTTGGAAATAAGAGGAATCACAGAGGGGTGGCTCTGTTATACAGAAGCAAGGACTTCGTCCACTGGGTGAAGGCCAAGCATCCTCTGCATTCGTCGAAATTGACCGGAATGTGGGAATGTCTCxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGAAAGAAGGGCTAGACACGTCAGCAGTGGGCTCCTCTCTTAAACACGTTTTGAAGGTGAGTTTGGACGATTACAAGTACGAGTATTATACAGTGGGAACCTACTTGCGGGACATGGATCGATACGTGCCAGACAATACCAGCAGTGATGATGAAAATGGATTGAGATATGACTATGGAAAATTCTATGCTTCGAAGACCTTTTTTGATCAATATAAGAATAGACGAATTCTGTGGGGTTGGATCAATGAATCTGACAGCGTCGCCGATGACGTCAGCAAAGGTTGGTCTGGTCTTCAGGCGGTTCCAAGAACGATCTGGCTAGACAGCGTCACTAGATCGCAGCTTTTGCAGTGGCCAGTTCCTGAAGTAGAATCCCTTCGTCGAAAGGAATATACAAACAAAGCATTGATCTCAGCAGTGGATCCGTTGTAGAAATTGCAGGCCTTAACGCTGCGCAGGTTGATGTGGAGGTCTCCTTTGATGTACCGAGGCTCGAAATCGCAGAGTTGGAAGAAGAGATGGGAGTAAATTTGACAGCTCAACAACTGTGCGGTCGGATGGGCTCAGCTGCGAGAACTGCTGGTGGCCCATTTGGGCTGTTTGTTTTGGCTTCCAAGGACTTGAATGAACGCACTGCTGTGTTTTTTCAGATCGTTCGCTATCGAAATGAATTGAAGTTATTAATGTGCAGTGACCAGAGCAGATCGTCTTTAAAGACAGACATTGATAAGACAACATATGGAGCTTTCGTGAATTATGTGGGTTCTTTCAAGGAGAAAAGCCTTTCATTGCGAGTCCTGGTTGATCATTCAATCGTGGAGAGCTTTGGAGAAGGGGGAAAGGTGTGCATAACGGCTCGAGTTTATCCCACCCTGGCAATAGACAAAGACGCCTATCTCTACGTCTTCAATAACGGCACATCCACTGTCACGGCCACCAAATTTACTGCCTGGGAAATGGCTTCCTCCAATCAAAGGCTTATGCACTAAAAAAATAATTTCTCCAATGCTTTGCCTATTCCAAATGGCTTCCTCCAATCAAAGGCTTATTGACTAA___ATAACTAATTTCTCCAATAGTTTGCCTATTCCAATCAAATATTTGCAATTTGTCACAAACTGGGAGAACCTTTTGGCGTGTCCCCTGGATGTTACTTGGTGCTGAGTTTTTGAATGTTTATTTATTGTCACTTGTTCCGTTTTCCTCGCGAAAAACAGGTTGCCTGCTCCAGATAAAGCGGCGTCGAATCTGCATGAAGCATCACCCCTTCATCGTTCAATTCATTGACGTGCATTTTGCTTTGGACTTTTTGTGCATGAATATAAATGGCGGCCCAATTTTCAAAGGTGGAAATTGAAAAAATAATGGAATCGGGAATCCGGGTCTTCCTATATGTTTATCGATGGGGCCACCTTCTAGATTTTGCCTCGATTGCAATGGGTATAGTTATTGTTATGATATGAAATACTTATTATATTGAATAAATTAATTTGTTTGGGTGAGGATCAACCATT

Fln Alignment:

sp_v1.1_unigene23571___LTCRMGSSAPMVLIHAITLSWLWLSISASHVVH-----TVNTAKTSIQQPYRTAYHFQPQKNWMNDPNGPMFYKGFYHLFYQYNPEGAVWGNIVWGHSVSKDLINWHSLDPAIVPSEWYDIKGCWSGSATLLHGDKPVILYTGWANSSQQMQNMVVPKDATDPLLREWVKIPQNPLLIPEF--GINGSEFRDPTTGWLGHDGKWRIVVGNKRNHRGVALLYRSKDFVHWVKAKHPLHSSKLTGMWECLxxxxxxxxGKEGLDTSAVGSS---LKHVLKVSLDDYKYEYYTVGTYLRDMDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQYKNRRILWGWINESDSVADDVSKGWSGLQAVPRTIWLDSVTRSQLLQWPVPEVESLRRKEYTN
Q43866_______________MTKEVCSNIGLWLLLTLLIGNYVVNLEASHHVYKRLTQSTNTKSPSVNQPYRTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITYTSKDFLKWEKSPEPLHYDDGSGMWECPxxxxxxxxGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTIGTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLDR-SGKQLIQWPVREVERLRTKQVKN

SNPs (tot: 189)

Position	A %	C %	G %	T %	Probability
338		20		80	0.995493
341		20		80	0.995493
342		80	20		0.995493
346		80		20	0.995493
347	80	20			0.995493
348	80			20	0.995493
349			80	20	0.995493
352	80	20			0.995493
357	20			80	0.995493
358	80	20			0.995493
421		87	12		0.999964
423	12	12		56	1.0
424		12	87		0.999964
425		12		87	0.999964
426			12	87	0.999964
427	12			87	0.999964
428		86	13		1.0
429		8	91		0.999807
430	73	13		13	1.0
431	73	4		21	1.0
433		4	86	8	0.999539
434	82	17			1.0
435	8			86	0.999539
436		91	8		0.999807
440		8		91	0.999807
442	86	8	4		0.999539
476			92	7	0.999664
483		7	92		0.999664
621			92	8	0.999718
622		8		91	0.999766
625	91	8			0.999807
642		9		90	0.999872
661	90		10		0.999898
667	10		90		0.999898
675	10			90	0.999898
688			89	10	0.999919
689	89	10			0.999919
697		9	90		0.999872
698	90		9		0.999872
701		90		10	0.999898
702		90	10		0.999898
707		90		10	0.999898
711	90	10			0.999898
714			90	10	0.999898
717	10			90	0.999898
718		10	90		0.999898
719			90	10	0.999898
721	10	90			0.999898
722	90			10	0.999898
773			42	57	1.0
774			57	42	1.0
775			83	16	0.994512
777			16	83	0.994512
779	16			83	0.994512
782			16	83	0.994512
793	80	20			0.995493
916	85	14			0.993533
918		85		14	0.993533
919	85	14			0.993533
923	14		85		0.993533
924		14	85		0.993533
927		83		16	0.994512
928		83	16		0.994512
929			16	83	0.994512
932		83	16		0.994512
934		20		80	0.995493
936	80	20			0.995493
937	80			20	0.995493
1040		14	85		0.993533
1041	85		14		0.993533
1043		14	85		0.993533
1044	85		14		0.993533
1048	85	14			0.993533
1049	85	14			0.993533
1050	85			14	0.993533
1054	85	14			0.993533
1057		14	85		0.993533
1059			85	14	0.993533
1060	85	14			0.993533
1061	14			85	0.993533
1075	83	16			0.994512
1076			16	83	0.994512
1080	83		16		0.994512
1081	16			83	0.994512
1082		16	83		0.994512
1086		83	16		0.994512
1088	83	16			0.994512
1089	80			20	0.995493
1094	20			60	0.99255
1213		20	80		0.995493
1216	80			20	0.995493
1218	80		20		0.995493
1222		80		20	0.995493
1298	66	33			0.997452
1300		66		33	0.997452
1301	66	33			0.997452
1302			33	66	0.997452
1306		33		66	0.997452
1309		66		33	0.997452
1310	66		33		0.997452
1313	66			33	0.997452
1316		33	66		0.997452
1318	33		66		0.997452
1319	66	33			0.997452
1322	33	66			0.997452
1512			14	85	0.993533
1516	85		14		0.993533
1517	85			14	0.993533
1519	14		85		0.993533
1520	85	14			0.993533
1525	85		14		0.993533
1526	85	14			0.993533
1530	85			14	0.993533
1532	14		85		0.993533
1534	85			14	0.993533
1536	14			85	0.993533
1588		14		85	0.993533
1590		85		14	0.993533
1591	85	14			0.993533
1598	85			14	0.993533
1599			85	14	0.993533
1600	85		14		0.993533
1603	85			14	0.993533
1608	14		85		0.993533
1616	63	36			1.0
1618	63			36	1.0
1620	63			36	1.0
1624	63	36			1.0
1628	63	9	27		1.0
1630	63	27	9		1.0
1632		33	66		1.0
1633	66			33	1.0
1654	86	13			0.999973
1655	80	13	6		0.999961
1658	86	13			0.999973
1662		13	86		0.999973
1663	13		86		0.999973
1664		20	80		1.0
1691		13		86	0.999973
1771	88		11		0.999937
1772		88		11	0.999937
1774		88	11		0.999937
1777	11		88		0.999937
1780	88	11			0.999937
1782	88			11	0.999937
1784	88		11		0.999937
1786	88			11	0.999937
1787	88		11		0.999937
1788	88			11	0.999937
1789		11	88		0.999937
1792			88	11	0.999937
1794	11	88			0.999937
1894	78	21			1.0
1895	78		7		0.999974
1897	78	21			1.0
1906	75			25	0.996473
1907	75			25	0.996473
1908			25	75	0.996473
1913		25		75	0.996473
1914	25		75		0.996473
1917	25			75	0.996473
1933		90	10		0.90298
1936		90	10		0.90298
1937	90			10	0.90298
1938	90		10		0.90298
1939	10			90	0.90298
1941	90	10			0.90298
1942	90			10	0.90298
1943	90			10	0.90298
1950			10	90	0.90298
1952		10	90		0.90298
1956	90	10			0.90298
2018			16	83	0.999991
2019			83	16	0.999991
2020		16	83		0.999991
2022	83			16	0.999991
2041	16	83			0.999991
2044		10	80		0.99967
2045		10	90		0.999898
2046	90			10	0.999898
2047		10		90	0.999898
2050			10	90	0.999898
2053		10		90	0.999898
2055			90	10	0.999898
2065		10		89	0.999919
2066	10			89	0.999919
2067		10		89	0.999919
2148		33		66	1.0
2226		37	62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain