SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23568

Length: 1465 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23568

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat-containing F-box family protein [Arabidopsis thaliana] sp\|Q9M8L2.1\|FBK30_ARATH RecName: Full=F-box/kelch-repeat protein At1g80440 gb\|AAF27130.1\|AC018849_18 unknown protein; 76867-75803 [Arabidopsis thaliana] gb\|AAL38703.1\| unknown protein [Ar	-	-	3.0e-39	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	f-box-like protein	-	-	0.0	62%

Source	InterPros	Term	Type	Identity
Blast2go	Kelch repeat type 1	IPR006652	-	62%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	62%
Blast2go	F-box domain, Skp2-like	IPR022364	-	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTH7

Fln msg:

Fln protein: MEGFVVLPWEIGRYCLLRVPYDSHATLGAVCKSWEAAVNHPQFYEDRKKFGTSQHCICLVELREYPSYHDDDLEYVVSVFDPLRGTWETLPPLPHFPGSHNGIPLFCDCVCVNRKLVLMGGWNPSDLYLAEALNTVFIYDFSSGKWSRGADMPEIRISGAFSVSPEGLLYVAGGHDDYEDFLRSAAVYNVFEDEWKIPPEMREERDECYGAFIDGKFFVISGYNCESVDRFKVSAEVYDPERGAWTTLENMGTVGEGEGKGPQSCVVAASSGRLYSFQKQQGVMEYDSSENVWSAVGSLPKTLIRISCCVAWRDKIFVCGYAESNGEVFYLFEPPPRKSAAIPPAETSRMWTATEKPEKSHVEYVQCIQSAVTFEI*

Protein Length: 378

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCAGGTTTTTCAAACTGTCTGTATCTGCCAACTTCATAGTCAATCGCCTTGCAACGTAAACATGGGCGTATATCGGTTATTCTCCTCGAATCAAATTATCTAACACCAGCAGTATCAAACCGTGTTTCGCTAGCTGTAGTGCATCTGATT_-_ATGGAGGGTTTTGTTGTTCTTCCATGGGAAATAGGTCGATATTGTCTGCTAAGAGTGCCTTACGACTCTCATGCAACCCTCGGAGCTGTTTGCAAAAGCTGGGAGGCCGCTGTGAACCACCCCCAGTTTTACGAAGACAGAAAAAAGTTTGGGACTTCGCAGCATTGTATATGTTTAGTGGAACTCCGGGAATATCCTTCTTATCATGATGATGATCTTGAATATGTGGTGTCTGTGTTTGACCCTTTGCGAGGAACCTGGGAAACGCTTCCTCCCCTTCCCCATTTCCCTGGTTCTCACAATGGGATTCCACTCTTCTGTGACTGCGTTTGTGTCAATCGAAAGCTGGTTTTGATGGGCGGATGGAATCCGTCCGACCTCTACCTAGCAGAGGCACTCAACACCGTTTTCATCTACGACTTTTCATCAGGAAAGTGGAGCCGTGGCGCAGACATGCCGGAGATTCGAATCTCCGGTGCTTTCTCGGTATCACCTGAGGGACTCCTTTACGTTGCAGGTGGACACGATGACTACGAAGATTTCCTGCGATCTGCAGCTGTTTACAATGTGTTTGAAGACGAATGGAAGATTCCTCCTGAGATGCGTGAAGAACGGGATGAATGCTATGGTGCTTTTATCGACGGCAAATTTTTCGTTATTAGCGGTTATAATTGTGAGTCGGTTGATCGATTCAAGGTGAGTGCGGAAGTTTATGATCCAGAAAGAGGGGCATGGACAACGCTGGAGAATATGGGGACTGTCGGGGAAGGGGAAGGGAAAGGGCCACAGTCTTGTGTGGTTGCTGCTTCTTCTGGGCGCTTGTACTCGTTCCAGAAGCAGCAAGGAGTGATGGAATATGACTCCAGCGAAAACGTTTGGAGCGCAGTAGGTTCTCTTCCAAAAACCCTTATAAGGATTTCATGTTGTGTAGCGTGGCGTGACAAGATTTTTGTTTGCGGTTATGCTGAGAGTAATGGTGAGGTTTTCTATCTGTTTGAGCCTCCGCCTAGGAAAAGTGCAGCAATACCGCCGGCGGAAACCAGTCGAATGTGGACCGCCACTGAGAAACCAGAAAAATCTCATGTGGAGTATGTTCAGTGTATTCAGTCCGCCGTTACTTTTGAGATTTAA___AGTTAAATAATAGTGATAATTACCATTGCGCTTTGAACACAGTGAAATGAATGTATGCGCGAACATGGGTAAGAGATTTTACATTCCTGTAATCTGGTAAACATATTTCAGAGTGTTCCTGCATCAGAAAATGATGTCATATTCTTGGATGTAGTTA

Fln Alignment:

sp_v1.1_unigene23568___GFVVLPWEIGRYCLLRVPYDSHATLGAVCKSWEAAVNHPQFYEDRKKFGTSQHCICLVELREYPSYHDDDLE----YVVSVFDPLRGTWETLPPLPHFPGSHNGIPLFCDCVCVNRKLVLMGGWNPSDLYLAEALNTVFIYDFSSGKWSRGADMPEIRISGAFSVSPEGLLYVAGGHDDYEDFLRSAAVYNVFEDEWKIPPEMREERDECYGAFIDGKFFVISGYNCESVDRFKVSAEVYDPERGAWTTLENMGTVGEGEGKGPQSCVVAASSGRLYSFQKQQGVMEYDSSENVWSAVGSLPKTLIRISCCVA-WRDKIFVCGYAESNGE-VFYLFEPPPRKSAAIPPAETSRMWTATEKPEKSHVEYVQCIQSAVTFE
A9NTH7_______________GIPNLPHEIVRECLLRVNYNSHDNLKAVCRNWETMLTSPLFYEDRKISGTSEQFICLLQAISQGKSPQDKRQRSPAYGLTLYYPLEDAWDSLPSIPYFSG---GIPLFCQCVCVNQKLFMIGGWHPSQW---EAMKSVFIYDFPSRTWRRGADMPRVRSFFACSISPDGLIYVAGGHGDNKSALRAAEAYDVKHDRWEILPPMSQERDRCHGVFLDGKFTVISGYATESQGRFERSAEVFDPSTGVWSRVENMWNI----GGCPRSCV--AALGHLYFFHNQH-VMRYNGKENVWEVVASLPQCMDDVATCAAVWHDKIFVSGSTYKSGEQVCYMF-------------DNSGKWVHIERPH----DFVGFVQSAITVE

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
89	66			33	0.997452
91			66	33	0.997452
93		33	66		0.997452
94		33	33	33	0.997753
95	33		33	33	0.997753
98	66	33			0.997452
100	33			66	0.997452
102	66	33			0.997452
105	33	33		33	0.997753
107	33		66		0.997452
128		20		80	0.995493
129	80		20		0.995493
133	80		20		0.995493
138		80		20	0.995493
139	80			20	0.995493
142	80		20		0.995493
143		20	80		0.995493
145	80		20		0.995493
149	80		20		0.995493
150	80	20			0.995493
151		80		20	0.995493
153	20		80		0.995493
198		16		83	0.994512
221			50	50	1.0
282		16	83		0.994512
284			83	16	0.994512
285	83	16			0.994512
288	16	83			0.994512
296	83		16		0.994512
297	83	16			0.994512
298		83		16	0.994512
299		83	16		0.994512
300	83			16	0.994512
302	16	83			0.994512
304		83		16	0.994512
334	40		60		1.0
344		60		40	1.0
436	60	40			1.0
558	25		75		1.0
562		75		25	1.0
571	62		37		1.0
580		75	25		1.0
583		25		75	1.0
598		25		75	1.0
601		71		28	1.0
606		71		28	1.0
610	42			57	1.0
623		71		28	1.0
631	57	42			1.0
655		83		16	0.994512
686		50	50		1.0
708	66		33		1.0
721	33			66	1.0
732	16	83			0.994512
821		20	80		0.995493
822	80			20	0.995493
825			80	20	0.995493
826		80	20		0.995493
828	80	20			0.995493
829	80	20			0.995493
832			20	80	0.995493
833			20	80	0.995493
834		20		80	0.995493
835		80		20	0.995493
838		20		80	0.995493
840		12		87	0.992554
845	12		87		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain