SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23554

Length: 903 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23554

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	glutamate decarboxylase	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	91%
Blast2go	Glutamate decarboxylase	IPR010107	-	91%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTD1

Fln msg: Overlapping hits, possible frame ERROR between 455 and 454, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 225 - 509

Fln protein: S*PWLSLIPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMRNCEANAKALADGLVRTGRFNILSKEVGVPLVAFSLKDSSRHDVYEISDHLRRFGWIVPAYTIAPQAQHVTLLRVVIREDFNRSLAERLVRDIExxVLRELDALPSKIVREVTASLVESHPELKEEKDIEETARLKSCHVVDRIVSCRRAAEEKKKFVFVEQKPNRIC*

Protein Length: 226

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCCTGAAGAGCTTATCTTTCACATCAACTATTTGGGGGCCGATCAGCCAACCTTCACCCTCAACTTCTCCAAAGGGGCCAGCCAGATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGATATAGGAACATCATGCGTAACTGCGAAGCAAACGCGAAGGCTCTGGCCGATGGTTTGGTGAGGACCGGGCGGTTCAACATACTGTCGAAAGAGGTGGGGGTTCCTCTAGTGGCGTTTTCGCTCAAGGACAGCAGCAGGCACGATGTGTATGAAATCTCTGACCACCTGAGAAGGTTCGGGTGGATCGTGCCCGCCTACACCATCGCCCCCCAAGCACAGCACGTAACCCTTCTGCGCGTGGTGATTCGCGAAGATTTCAACCGCAGTCTGGCAGAACGACTGGTTCGGGACATAGAGxxxxxxGTGTTGCGGGAACTTGACGCGCTTCCTTCAAAGATAGTGAGGGAAGTGACGGCATCTCTGGTAGAAAGCCATCCTGAACTCAAAGAAGAGAAAGATATAGAGGAGACTGCGAGGTTGAAGTCGTGTCATGTGGTGGACAGGATTGTTAGCTGTCGCAGAGCGGCCGAAGAGAAGAAGAAATTTGTTTTTGTTGAGCAGAAGCCCAATCGGATTTGTTGAAAACCATTGAAATAGCTTCTAATATTTATTTTATTTCTCCGTTGTTCATCGAATTATTCGGCTTAGCCATTGTTTTAGGATCGACAACTGCAGAATCGAATAGGAGAGATTTATCGAAACCACGTGCCAGGGGTGTGTGGCCCCTGAGTAGGTTTCATCAATTTTGTAGTATCTTCTGTTTTTTTTTAACTTTCCCTTGGAGAGGCTTATTACCAGTAATCATATTAT

Fln Alignment:

sp_v1.1_unigene23554___IPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMRNCEANAKALADGLVRTGRFNILSKEVGVPLVAFSLKDSSRHDVYEISDHLRRFGWIVPAYTIAPQAQHVTLLRVVIREDFNRSLAERLVRDIExVLRELDALPSKIVREVTASLVESHPELKEEKDIE-ETARLKSCHVVDRIVSCRRXXXXXXXXXXXXQKPNRIC
C0PTD1_______________LPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMSNCAANAKALADGLVRTGRFDILSKEVGVPLVAFSLKDNSKHDEYEIADHLRRYGWIVPAYTMAPDAQQVTLLRVVVREDFNRSLAERLVRDIExVLHELDALPSKLVTEVTASLVESHPELKEVKDIDIDSTKLNSCHVFNEVLNSQK--AVKAWKKFVAQKANRVC

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
299	33	66			0.997452
341			83	16	0.994512
346	16			83	0.994512
347		16	83		0.994512
349		83		16	0.994512
350		83		16	0.994512
352		83	16		0.994512
355	83			16	0.994512
451			14	85	0.993533
452	85			14	0.993533
624			90	10	0.90298
625	90		10		0.90298
627		10	90		0.90298
634	88			11	0.923564
636	87	12			0.992554
638	85	14			0.993533
640		28		71	1.0
641	14			85	0.993533
642		14	85		0.993533
643			14	85	0.993533
645			14	85	0.993533
646	14			85	0.993533
647		14		85	0.993533
648		14	85		0.993533
655	88			11	0.923564
657	88			11	0.923564
658	88	11			0.923564
659	11		88		0.923564
661		88		11	0.923564
666		88		11	0.923564
668			88	11	0.923564
695		44		55	1.0
721	11		88		0.923564
743		44	55		1.0
755	44		55		1.0
764	55		44		1.0
799	55		44		1.0
817			66	33	1.0
824	55			44	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain