SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23548

Length: 2828 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23548
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGGTTTTAGTGAGGGTTTTAGGGCCTGAGAGGAGCCGATAAAGCGACGGTAGCGCGTCAGAGGGATTTTCTAAACAGACGTCCGATCTAGCTTGCTGCGTGATTTTAAAAGTTTAGGTCTTTTGAAGCTCCTGATCAGTTCGGAAGAAGGAGAAAGCGATGGCTTTAGGTTCGCTATTGGTGTCCAGGCTTGCAAGGTCTCAGTCGAAGGGTATCGCTTCAAATGTTGTTCAATCTGCATATCTGGCTACACAGAATATTAAATCTTCAAACTTTGGTTCGCCACTGATACAGAGATGGGGAAATGCAGCCAGAGCTTTCAGCTCAAAGGGAGCTGGTAATGATGTGATTGGTATTGATTTGGGAACAACAAATTCATGTGTTGCTCTCATGGAAGGCAAGAACCCCAAAGTCATTGAAAACTCAGAAGGTGCACGGACAACCCCATCTGTTGTTGCTTTTAATCAAAAGGGAGAGCTTCTTGTAGGCACTCCTGCTAAGCGACAAGCTGTGACAAATCCAACAAACACAGTGTTTGGAACAAAGCGTTTGATAGGAAGGCGATTTGATGACCCACAGACGCAGAAAGAGATGAAGATGGTCCCATACAAAATTGTTAAGGCAACCAATGGTGATGCCTGGGTTGAAGTAAATGGGAACCAGTATTCGCCGAGTCAGATTGGAGCATTCATCTTGACAAAGATGAAAGAAACAGCTGAAGCTTATCTAGGGAGGTCTGTATCAAATGCAGTCATTACAGTGCCGGCCTATTTCAATGATGCTCAGCGTCAAGCAACTAAAGATGCTGGAAAAATTGCTGGTTTAGATGTGAAAAGAATTATCAATGAACCAACAGCAGCTGCCCTTTCATATGGTATGAATAACAAGGAAGGTTTGGTTGCTGTTTTTGATCTCGGCGGTGGAACTTTTGATGTTTCAATACTTGAAATATCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGATACCTTCTTGGGTGGTGAGGATTTTGATAACACTTTACTTGACTATCTTGTTTCGGAGTTCAAAAAATCAGAAGGCATCGACTTGTCTAAAGATAGGTTGGCCTTGCAAAGGTTGAGAGAGGCTGCAGAGAAGGCGAAGGTGGAATTGTCATCTTCTTCGCAGACTGATGTTAATCTGCCATTTATCACAGCAGATGCATCTGGGGCCAAGCATTTGAATATCACTTTAACTCGATCAAAGTTTGAAAATTTGGTTAATCACTTAATTGAGAGAACCAGAGATCCTTGCAAGAATTGCTTGAAAGATGCGGGGGTCTCAATAAAGGAAGTGGATGAAGTGCTTCTTGTAGGAGGTATGACTCGAGTGCCTAAGGTTCAAGAAATTGTATCAGAGATCTTTGGTAAGCAACCAAGTAAAGGTGTGAACCCTGATGAGGCCGTTGCCATGGGTGCTGCCATTCAGGGTGGTATACTTCGTGGTGATGTGAAAGAGTTACTTCTTCTTGATGTTACTCCTCTGTCATTGGGAATTGAAACTCTTGGTGGTGTATTTACACGGCTTATCAACAGAAACACCACAATTCCAACAAAGAAAAGTCAGGTGTTTTCAACTGCTGCAGATGGTCAAACTCAGGTAGGAGTGAGAGTATTGCAAGGTGAGCGTGAAATGGCTTCAGATAATAAGCTGCTTGGTGAGTTCGAGCTTGTTGGCATTCCACCAGCACCCAGAGGTGTACCTCAAATAGAGGTTACCTTCGACATTGATGCAAATGGTATTGTGACTGTATCTGCTAAAGACAAAGCCACGAACAAGGAACAGAATATCACTATCCGGTCGTCTGGAGGACTGACAGAAGACGAGATACAGAAAATGGTGAGAGAGGCTGAGATGCATGCTCAAAAAGATCAGGAAAAGAAGGCATTAATCGATGCTAGAAATGCTGCAGACAGCACGATATACTCAGTAGAGAAGAGTTTGAGCGAATATAAAGACAAACTTTCTTCAGATGTCATTTCTGAAATAGAGTCAGCTGTAACAGACTTAAAGAAAGCAATGGCTAATGATGATGTTGAAGATATCAAAGCAAAAACTGATGCAGCAACTGCAGCATCCTTGAAAATAGGCCAGAGTGTGCAGCAACAATCTGGTGGCTCATCCTCTGGTTCTCAAGGTGGATCTCAAGGCGGAGACCAGGCACCAGAGGCTGAATATGAAGAGGTCAAGAAGTGATTTAGGCAATTGAGGTCGAATCTGAGGTTATCTAGGAGATGCTAGGTACAAAATTACTAGTTTGAAAATTCAAAACTGTTATAAGCAAATATTTAGATTTGCTTAATGCAGGCATTTTTGTTCTGAGCAAGAAATATTATTTTTTCCATGTTATGACTGTTGACTCTGAACAGGAGAAATCTGTAGTTTATCATATTTGAACTCTACAAAATTCTTCCCTAGAGCTACTCTTTTGTTCTTTAATGACTGTTACCTTATTCAAGTGGTCCATGATTTTGTCGTGGTGTTTGCGTGGAGTATCTGAGCTTTTTGATTAAGATCCAGGGAACAATTTAGCTTTTCAGTCGATGGAAAAATCCAATGATTATATGCCGTTATATGCCGTTCCGGATGAACCTAATTATGCTTCTTGTAGTCAGTGTTAATATTTTCNGTGATCTATTTATTGTTTGAATTGTCTTGATAAAATTGCTTTCCAGGTGGTCCATTAGTTGCTTGTTCTGTAGAAACACAAATGTATTTTACAAATGCCTAGGCCCTACAGGCATTTTATTAACAGCAAC

Ace file of the UniGene sp_v1.1_unigene23548

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein, putative n=1 Tax=Ricinus communis RepID=B9RX55_RICCO	-	-	84%
FL-Next	sp=Heat shock 70 kDa protein, mitochondrial; Phaseolus vulgaris (Kidney bean) (French bean).	-	-	81%
Blast2go	heat shock 70 protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to virus	GO:0009615	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	response to heat	GO:0009408	Biological Process	90%
Blast2go	metabolic process	GO:0008152	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	cell wall	GO:0005618	Cellular Component	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	90%
Blast2go	Chaperone DnaK	IPR012725	-	90%
Blast2go	Heat shock protein 70	IPR013126	-	90%
Blast2go	Heat shock protein 70, conserved site	IPR018181	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q01899

Fln msg:

Fln protein: MALGSLLVSRLARSQSKGIASNVVQSAYLATQNIKSSNFGSPLIQRWGNAARAFSSKGAGNDVIGIDLGTTNSCVALMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKATNGDAWVEVNGNQYSPSQIGAFILTKMKETAEAYLGRSVSNAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALSYGMNNKEGLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLDYLVSEFKKSEGIDLSKDRLALQRLREAAEKAKVELSSSSQTDVNLPFITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVEDIKAKTDAATAASLKIGQSVQQQSGGSSSGSQGGSQGGDQAPEAEYEEVKK*

Protein Length: 688

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGGTTTTAGTGAGGGTTTTAGGGCCTGAGAGGAGCCGATAAAGCGACGGTAGCGCGTCAGAGGGATTTTCTAAACAGACGTCCGATCTAGCTTGCTGCGTGATTTTAAAAGTTTAGGTCTTTTGAAGCTCCTGATCAGTTCGGAAGAAGGAGAAAGCG_-_ATGGCTTTAGGTTCGCTATTGGTGTCCAGGCTTGCAAGGTCTCAGTCGAAGGGTATCGCTTCAAATGTTGTTCAATCTGCATATCTGGCTACACAGAATATTAAATCTTCAAACTTTGGTTCGCCACTGATACAGAGATGGGGAAATGCAGCCAGAGCTTTCAGCTCAAAGGGAGCTGGTAATGATGTGATTGGTATTGATTTGGGAACAACAAATTCATGTGTTGCTCTCATGGAAGGCAAGAACCCCAAAGTCATTGAAAACTCAGAAGGTGCACGGACAACCCCATCTGTTGTTGCTTTTAATCAAAAGGGAGAGCTTCTTGTAGGCACTCCTGCTAAGCGACAAGCTGTGACAAATCCAACAAACACAGTGTTTGGAACAAAGCGTTTGATAGGAAGGCGATTTGATGACCCACAGACGCAGAAAGAGATGAAGATGGTCCCATACAAAATTGTTAAGGCAACCAATGGTGATGCCTGGGTTGAAGTAAATGGGAACCAGTATTCGCCGAGTCAGATTGGAGCATTCATCTTGACAAAGATGAAAGAAACAGCTGAAGCTTATCTAGGGAGGTCTGTATCAAATGCAGTCATTACAGTGCCGGCCTATTTCAATGATGCTCAGCGTCAAGCAACTAAAGATGCTGGAAAAATTGCTGGTTTAGATGTGAAAAGAATTATCAATGAACCAACAGCAGCTGCCCTTTCATATGGTATGAATAACAAGGAAGGTTTGGTTGCTGTTTTTGATCTCGGCGGTGGAACTTTTGATGTTTCAATACTTGAAATATCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGATACCTTCTTGGGTGGTGAGGATTTTGATAACACTTTACTTGACTATCTTGTTTCGGAGTTCAAAAAATCAGAAGGCATCGACTTGTCTAAAGATAGGTTGGCCTTGCAAAGGTTGAGAGAGGCTGCAGAGAAGGCGAAGGTGGAATTGTCATCTTCTTCGCAGACTGATGTTAATCTGCCATTTATCACAGCAGATGCATCTGGGGCCAAGCATTTGAATATCACTTTAACTCGATCAAAGTTTGAAAATTTGGTTAATCACTTAATTGAGAGAACCAGAGATCCTTGCAAGAATTGCTTGAAAGATGCGGGGGTCTCAATAAAGGAAGTGGATGAAGTGCTTCTTGTAGGAGGTATGACTCGAGTGCCTAAGGTTCAAGAAATTGTATCAGAGATCTTTGGTAAGCAACCAAGTAAAGGTGTGAACCCTGATGAGGCCGTTGCCATGGGTGCTGCCATTCAGGGTGGTATACTTCGTGGTGATGTGAAAGAGTTACTTCTTCTTGATGTTACTCCTCTGTCATTGGGAATTGAAACTCTTGGTGGTGTATTTACACGGCTTATCAACAGAAACACCACAATTCCAACAAAGAAAAGTCAGGTGTTTTCAACTGCTGCAGATGGTCAAACTCAGGTAGGAGTGAGAGTATTGCAAGGTGAGCGTGAAATGGCTTCAGATAATAAGCTGCTTGGTGAGTTCGAGCTTGTTGGCATTCCACCAGCACCCAGAGGTGTACCTCAAATAGAGGTTACCTTCGACATTGATGCAAATGGTATTGTGACTGTATCTGCTAAAGACAAAGCCACGAACAAGGAACAGAATATCACTATCCGGTCGTCTGGAGGACTGACAGAAGACGAGATACAGAAAATGGTGAGAGAGGCTGAGATGCATGCTCAAAAAGATCAGGAAAAGAAGGCATTAATCGATGCTAGAAATGCTGCAGACAGCACGATATACTCAGTAGAGAAGAGTTTGAGCGAATATAAAGACAAACTTTCTTCAGATGTCATTTCTGAAATAGAGTCAGCTGTAACAGACTTAAAGAAAGCAATGGCTAATGATGATGTTGAAGATATCAAAGCAAAAACTGATGCAGCAACTGCAGCATCCTTGAAAATAGGCCAGAGTGTGCAGCAACAATCTGGTGGCTCATCCTCTGGTTCTCAAGGTGGATCTCAAGGCGGAGACCAGGCACCAGAGGCTGAATATGAAGAGGTCAAGAAGTGA___TTTAGGCAATTGAGGTCGAATCTGAGGTTATCTAGGAGATGCTAGGTACAAAATTACTAGTTTGAAAATTCAAAACTGTTATAAGCAAATATTTAGATTTGCTTAATGCAGGCATTTTTGTTCTGAGCAAGAAATATTATTTTTTCCATGTTATGACTGTTGACTCTGAACAGGAGAAATCTGTAGTTTATCATATTTGAACTCTACAAAATTCTTCCCTAGAGCTACTCTTTTGTTCTTTAATGACTGTTACCTTATTCAAGTGGTCCATGATTTTGTCGTGGTGTTTGCGTGGAGTATCTGAGCTTTTTGATTAAGATCCAGGGAACAATTTAGCTTTTCAGTCGATGGAAAAATCCAATGATTATATGCCGTTATATGCCGTTCCGGATGAACCTAATTATGCTTCTTGTAGTCAGTGTTAATATTTTCaGTGATCTATTTATTGTTTGAATTGTCTTGATAAAATTGCTTTCCAGGTGGTCCATTAGTTGCTTGTTCTGTAGAAACACAAATGTATTTTACAAATGCCTAGGCCCTACAGGCATTTTATTAACAGCAAC

Fln Alignment:

sp_v1.1_unigene23548___NVVQSAYLATQNIKSSNFGSPLIQRWGNAARAFSSKGAGNDVIGIDLGTTNSCVALMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKATNGDAWVEVNGNQYSPSQIGAFILTKMKETAEAYLGRSVSNAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALSYGMNNKEGLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLDYLVSEFKKSEGIDLSKDRLALQRLREAAEKAKVELSSSSQTDVNLPFITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVEXXXXXXXXXXXXSLKIXXXXXXXXXXXXXXXXXXXXXXXXAPEAEYEEVKK
Q01899_______________DVASATFSAYRSLTGSTKPAYVAQKWSCLARPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYREKIPSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKI-GEHMSGGSSGGSSAGGSQGGGDQAPEAEYEEVKK

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
25	14		85		0.993533
27	14	85			0.993533
29		14		85	0.993533
31	85		14		0.993533
32		85		14	0.993533
34			14	85	0.993533
35	25			75	1.0
42	25	62		12	1.0
43	87	12			0.992554
44	12	62	25		1.0
45	25	12		62	1.0
46		62	25	12	1.0
48	15	7	38	7	1.0
49	7		76	15	0.999983
103	8			91	0.999807
104		91		8	0.999807
105	91		8		0.999807
107	91		8		0.999807
422		87		12	0.992554
423	87	12			0.992554
424			12	87	0.992554
425		12	87		0.992554
426	12			87	0.992554
429			12	87	0.992554
430	12		87		0.992554
431		87	12		0.992554
433		85	14		0.993533
434	14			85	0.993533
440	66	33			0.997452
441	66	33			0.997452
618		12		87	0.992554
656	87		12		0.992554
960		33		66	0.997452
973		20		80	0.995493
1030		20	80		0.995493
1034	80			20	0.995493
1035			20	80	0.995493
1041		75	25		0.996473
1042		25		75	0.996473
1045			75	25	0.996473
1046		25	75		0.996473
1047	25			75	0.996473
1048		25	75		0.996473
1049			75	25	0.996473
1050		25		75	0.996473
1051	25		75		0.996473
1055	50		25	25	0.995533
1307			75	25	0.996473
2047	66		33		0.997452
2373	38		61		1.0
2430	10			90	0.90298
2436		90	10		0.90298
2483		61		38	1.0
2518		33		66	1.0
2525		31		68	1.0
2532		5		82	0.999919
2562	11		88		0.923564
2596	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain