SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23532

Length: 1178 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23532

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyl hydrolase-like protein (Fragment) n=5 Tax=Picea sitchensis RepID=E0Z5X8_PICSI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	glycosyl hydrolase-like protein	-	-	86%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	86%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	86%
Blast2go	Glycoside hydrolase, family 3, active site	IPR019800	-	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 379 - 631

Fln protein: MVSRMNSGWYVFLCVVILCSC*GLVGTDDSGREDWTNDPD*KNRCHCRCYEKLLHWECTEWRRERACTSGISGYMDQHGDELQKCAMSTRLQIPMIYGIDAVHGHNNVYGATIFPHNIGLGATRDPDLVRRIGAATALEVRATGIPYTFAPCVAVCRDPRWGRCYESYSEDPTVVKSMTQIILGLQGQPPAKYERGIPFVAGESNTVACAKHFVGDGGTTDGINENNTVISYDGLVNIHMAPYFDAIAKGVSTIMISYSSWNGVKMHANRFLVSQVLKKQLGFKGFVISDWQGIDRITSPAGANYSLSVFDGVSAGIDMVMVPYNFMDFIGDLTSQVKSGLISMTRINDAVRRILRVKFTMGLFEHPMANPSLANQLGS

Protein Length: 380

Fln nts: ATGGGATATTGGCAGAGTGGAGTTGAAGGATCCTCTGTCG_-_ATGGTGAGCAGGATGAATTCAGGATGGTATGTGTTTCTCTGTGTTGTGATTTTATGCTCGTGTTAAGGACTTGTTGGCACGGATGACTCTGGAAGAGAAGATTGGACAAATGACCCAGATTGAAAGAACAGATGCCACTGCAGATGTTATGAAAAATTACTACATTGGGAGTGTACTGAGTGGAGGAGGGAGCGTGCCTGCACCTCAGGCATCTCCGGCTACATGGATCAACATGGTGATGAGCTCCAGAAGTGTGCCATGTCTACTCGTCTGCAGATACCTATGATATATGGCATTGATGCTGTGCATGGCCACAACAATGTCTATGGGGCTACCATCTTCCCTCACAATATTGGGCTTGGAGCCACCAGAGATCCTGATTTGGTTAGAAGAATTGGAGCTGCCACAGCTCTGGAAGTTAGAGCTACTGGCATTCCGTACACATTTGCTCCATGTGTTGCTGTTTGCAGAGATCCCCGATGGGGGCGCTGCTATGAGAGCTATAGCGAGGATCCAACAGTTGTCAAGTCCATGACACAGATTATCTTGGGTCTGCAGGGGCAGCCTCCTGCTAAATATGAAAGGGGGATTCCTTTTGTAGCTGGAGAGTCAAATACTGTAGCTTGTGCTAAGCACTTTGTGGGTGATGGTGGAACAACCGATGGTATCAATGAGAATAACACTGTTATCAGTTATGATGGATTAGTAAATATTCATATGGCCCCCTATTTTGATGCCATTGCTAAAGGGGTCTCCACGATTATGATTTCCTATTCCAGTTGGAACGGAGTGAAGATGCACGCTAACCGTTTTCTCGTTTCTCAAGTTCTAAAGAAGCAACTTGGCTTCAAGGGCTTTGTTATTTCAGATTGGCAAGGTATCGACAGAATAACTAGCCCGGCTGGTGCTAATTACTCTTTGTCAGTCTTTGACGGTGTCAGTGCAGGGATTGACATGGTGATGGTTCCCTACAATTTCATGGACTTTATTGGCGATCTGACTTCGCAAGTCAAGAGTGGTTTGATCTCAATGACGAGAATAAATGATGCAGTTCGAAGAATTCTGAGAGTAAAATTCACCATGGGACTCTTTGAACATCCTATGGCAAATCCGAGCCTAGCCAACCAACTTGGCAGCA

Fln Alignment:

sp_v1.1_unigene23532___MVSRMNSGWYVFLCVVILCSC*GLVGT---DDSGREDWTNDPD*KNRCHCRCYEKLLHWECTEWRRERACTSGISGY-----MDQHG----------------DELQKCAMSTRLQIPMIYGIDAVHGHNNVYGATIFPHNIGLGATRDPDLVRRIGAATALEVRATGIPYTFAPCVAVCRDPRWGRCYESYSEDPTVVKSMTQIILGLQGQPPAKYERGIPFVAGESNTVACAKHFVGDGGTTDGINENNTVISYDGLVNIHMAPYFDAIAKGVSTIMISYSSWNGVKMHANRFLVSQVLKKQLGFKGFVISDWQGIDRITSPAGANYSLSVFDGVSAGIDMVMVPYNFMDFIGDLTSQVKSGLISMTRINDAVRRILRVKFTMGLFEHPMANPSLANQLGS
A9NUD1_______________MASRMNSGWYLLLSVVVLCKCAGAIGYAKYKDPSQPIIARVEDLLARMTVE--EKI--GQMTQIERSDATADVMKKYYIGSVLSGGGSVPAPKASPATWINMVDDLQKGAMSTRLQIPMMYGIDAVHGHNNAYGATMFPHNIGLGATRDPDLARRIGAATALEVRATGIQYTFAPCVAVCRDPRWGRCYESYSEDPKIVKAMTQIIFGLQGQPPANSTKGVPFIAGQSNVAACAKHFVGDGGTTNGIDENNTVIDYKGLVNIHMTPYFDAIAKGVSTIMVSYSSWNGMKMHANRFLVSEVLKKQLGFKGFVISDWQGIDRITSPPGANYSLSVFDGVGAGIDMVMVPENFTNFITELTSQVKGGLISMTRINDAVRRILTVKFTMGLFEYPMADPSLANHFGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain