SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23530

Length: 962 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23530

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone H2A n=7 Tax=Spermatophyta RepID=A5AKG7_VITVI	-	-	84%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	histone 2	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	92%
Blast2go	regulation of flower development	GO:0009909	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Blast2go	Histone H2A	IPR002119	-	92%
Blast2go	Histone core	IPR007125	-	92%
Blast2go	Histone-fold	IPR009072	-	92%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
399		12		87	0.992554
400			12	87	0.992554
402		12	87		0.992554
404	87			12	0.992554
406	14			85	0.993533
407	85	14			0.993533
408		14		85	0.993533
412	85		14		0.993533
418		14	85		0.993533
419	85			14	0.993533
420		16	83		0.994512
421	16		83		0.994512
871	95		1	3	0.911382
887	6	2		90	0.999997
888	7		92		0.999999
889	7			92	0.999999
890	5		95		0.997749
917		8		91	0.999807
938	16			83	0.994512
939	16		83		0.994512
940	20	60			0.99255
941	20		20	60	0.99255
944	33		66		0.997452
945	33			66	0.997452
946	33		66		0.997452
947		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain