SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23527

Length: 2307 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23527
CGTCGTGACCTTGGCTGTCACTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATCTTTGGGCAGCGTCGTGACCTTGGCTGTCACTCAGGCTTTGGATGCCGATTCATCCCGAAACCCAGAAGACTCAAGGATATTGCTTTATAGAGTACAATACCTCTCAGGAAGCACAAACAGCAAAAGATCAAACAAATGGATATAAGCTAGACAAATCCCACGTATTTGCTGTGAGCATGTTTGATGATTTTGATAGATATATGAAAGTATCAAACGAATGGATTTCTCCAGAAACGAAGGCCTATACACCTGGGGAAAATTTACAACAGTGGCTAACAGATGAGAAAGGACGTGATCAATTTGTTATCCGTGCGAACACTGACACAGAAGTTTATTGGAATGATCCTAGACATCTCAAACCAGATCTGGTCTACCGCCGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTTGGAACATACCTGGCAACAGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGCAGCACAACCTTTAACCGCCTGATGCGCTTTGCACATCCACAGGTCAAGTTGATAGATTTTTCTCCTGGTGAAAAATTTCTGGTTACTTACAGCAGCCACGAGCCAAGCAATCCTCGAGATACACAGAGGGTTACCCTTAACATTTTTGAAGTGAGGACCGGTAAAGTATTGAGAGAGTTCAAAGGAAGTGCTGATGATTTTGCAACTGGCGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGTTGGTGGCAGAGATGACAAATACTTTGCCCGCATTGGGAAAAATGCCATCAGTGTTTATGAAACAGATACCATGAGTCTCCTAGATAAGAAATCCCTCAAAGTTGACAATGTAATGGATTTCTGTTGGTCACCAACAGATCCAATACTAGCCTTGTTTGTTCCAGAAGGAGGTGGTGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGCGGCAGAAAAATCTGTTCAGTGTAAGTGATTGCAAAATGTATTGGCAAAGCAATGGGGACTACTTAGCAGTCAAAGTTGACCGCTATACAAAGACGAAGAAAAGTACATACACAGGTTTTGAACTTTTCCGAATAAAGGAAAGAGATATCCCCATAGAGGTTCTGGAATTAGAGAACAAGAATGACAAGATCATTGCATTCGCTTGGGAGCCCAAAGGCCATAGGTTTGCTATTATCCACGGGGATGGACCCAGGCCAGATATTAGTTTCTATTCAATGAGGAGCCCTAATAACCTGGGCCGGGTTTCCAAGCTGGCTACCATTAAAGGAAAACAAGCAAATTCTCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGGCTGAAAACCTTAAATGGTCTCCTTGAATTCTACAATGTCGATGAACTTGAGACAATGGCAACTGGTGAACATTTTATGGCAACTGATATTGAGTGGGATCCTACTGGAAGGTATGCTGCAACAGCAGTCACAACTGTTCATGAAATGGAAAATGGTTTTAACATATGGTCTTTCAATGGAAAGTTGTTGTACCGCATTCCCAAAGATCATTTCTATCAGCTATTATGGCGTCCAAGGCCACCCTCCCTTTTAAGCCCAGAGAAAGAGGAGGAGATTTCTAAGAATTTGAGAAAGTATAGCAAGAAGTATGAGGCTGAAGACCAGGATGTTTCATTGTTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAGATTGCAAGAGGAGTGGCAGGGCTGGGTCAATGAATGGAAACGCTTTCACGAGGAAGAGAAATTATATAGGCAGGAACTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGTTAGTAGATGTTACGGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGAGTGATTGTATAGCATGAATCTATTTGTGCCTCCATACAGGCATATATGATTGTGCCTTCATGCAGGGAGATAGCTTGGGCAGAAAATGCAGTGGTTTTCAACTGTTTTCATTGTCACACTCATAGTAGCATAGATACTTGTTTGTTGAAAGTTTTGTAGTATGGGCTTTGAAATGCCCAATTTCTCAAAAGAAAAATTGCAGTTCGACAGTTTGATCTGTTATTTATCGAATGATAGAATGTTTTGAGGGTACCTTTTTTGCATAGTCGGATTTTTTATGTAATAGATTTTCACTGTGATAATTTTCCCGAGTGGAAATGCATTAATTAATTT

Ace file of the UniGene sp_v1.1_unigene23527

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative; K03253 translation initiation factor eIF-3 subunit 9	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	88%
Blast2go	Translation initiation factor eIF-3b	IPR011400	-	88%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	88%
Blast2go	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	88%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 658 - 724

Fln protein: RRDLGCHSREV*ETRRCCSQDLWAAS*PWLSLRLWMPIHPETQKTQGYCFIEYNTSQEAQTAKDQTNGYKLDKSHVFAVSMFDDFDRYMKVSNEWISPETKAYTPGENLQQWLTDEKGRDQFVIRANTDTEVYWNDPRHLKPDLVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGSTTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWVGGRDDKYFARIGKNAISVYETDTMSLLDKKSLKVDNVMDFCWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDISFYSMRSPNNLGRVSKLATIKGKQANSLYWSPIGRFIILAGLKTLNGLLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTTVHEMENGFNIWSFNGKLLYRIPKDHFYQLLWRPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEEWQGWVNEWKRFHEEEKLYRQELRDGEPSDEEEEYEAEEVEVEELVDVTEEIASFGFEQMD*

Protein Length: 659

Fln nts: CGTCGTGACCTTGGCTGTCACTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATCTTTGGGCAGCGTCGTGACCTTGGCTGTCACTCAGGCTTTGGATGCCGATTCATCCCGAAACCCAGAAGACTCAAGGATATTGCTTTATAGAGTACAATACCTCTCAGGAAGCACAAACAGCAAAAGATCAAACAAATGGATATAAGCTAGACAAATCCCACGTATTTGCTGTGAGCATGTTTGATGATTTTGATAGATATATGAAAGTATCAAACGAATGGATTTCTCCAGAAACGAAGGCCTATACACCTGGGGAAAATTTACAACAGTGGCTAACAGATGAGAAAGGACGTGATCAATTTGTTATCCGTGCGAACACTGACACAGAAGTTTATTGGAATGATCCTAGACATCTCAAACCAGATCTGGTCTACCGCCGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTTGGAACATACCTGGCAACAGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGCAGCACAACCTTTAACCGCCTGATGCGCTTTGCACATCCACAGGTCAAGTTGATAGATTTTTCTCCTGGTGAAAAATTTCTGGTTACTTACAGCAGCCACGAGCCAAGCAATCCTCGAGATACACAGAGGGTTACCCTTAACATTTTTGAAGTGAGGACCGGTAAAGTATTGAGAGAGTTCAAAGGAAGTGCTGATGATTTTGCAACTGGCGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGTTGGTGGCAGAGATGACAAATACTTTGCCCGCATTGGGAAAAATGCCATCAGTGTTTATGAAACAGATACCATGAGTCTCCTAGATAAGAAATCCCTCAAAGTTGACAATGTAATGGATTTCTGTTGGTCACCAACAGATCCAATACTAGCCTTGTTTGTTCCAGAAGGAGGTGGTGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGCGGCAGAAAAATCTGTTCAGTGTAAGTGATTGCAAAATGTATTGGCAAAGCAATGGGGACTACTTAGCAGTCAAAGTTGACCGCTATACAAAGACGAAGAAAAGTACATACACAGGTTTTGAACTTTTCCGAATAAAGGAAAGAGATATCCCCATAGAGGTTCTGGAATTAGAGAACAAGAATGACAAGATCATTGCATTCGCTTGGGAGCCCAAAGGCCATAGGTTTGCTATTATCCACGGGGATGGACCCAGGCCAGATATTAGTTTCTATTCAATGAGGAGCCCTAATAACCTGGGCCGGGTTTCCAAGCTGGCTACCATTAAAGGAAAACAAGCAAATTCTCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGGCTGAAAACCTTAAATGGTCTCCTTGAATTCTACAATGTCGATGAACTTGAGACAATGGCAACTGGTGAACATTTTATGGCAACTGATATTGAGTGGGATCCTACTGGAAGGTATGCTGCAACAGCAGTCACAACTGTTCATGAAATGGAAAATGGTTTTAACATATGGTCTTTCAATGGAAAGTTGTTGTACCGCATTCCCAAAGATCATTTCTATCAGCTATTATGGCGTCCAAGGCCACCCTCCCTTTTAAGCCCAGAGAAAGAGGAGGAGATTTCTAAGAATTTGAGAAAGTATAGCAAGAAGTATGAGGCTGAAGACCAGGATGTTTCATTGTTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAGATTGCAAGAGGAGTGGCAGGGCTGGGTCAATGAATGGAAACGCTTTCACGAGGAAGAGAAATTATATAGGCAGGAACTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGTTAGTAGATGTTACGGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGA___GTGATTGTATAGCATGAATCTATTTGTGCCTCCATACAGGCATATATGATTGTGCCTTCATGCAGGGAGATAGCTTGGGCAGAAAATGCAGTGGTTTTCAACTGTTTTCATTGTCACACTCATAGTAGCATAGATACTTGTTTGTTGAAAGTTTTGTAGTATGGGCTTTGAAATGCCCAATTTCTCAAAAGAAAAATTGCAGTTCGACAGTTTGATCTGTTATTTATCGAATGATAGAATGTTTTGAGGGTACCTTTTTTGCATAGTCGGATTTTTTATGTAATAGATTTTCACTGTGATAATTTTCCCGAGTGGAAATGCATTAATTAATTT

Fln Alignment:

sp_v1.1_unigene23527___LWMPIHPETQKTQGYCFIEYNTSQEAQTAKDQTNGYKLDKSHVFAVSMFDDFDRYMKVSNEWISPETKAYTPGENLQQWLTDEKGRDQFVIRANTDTEVYWNDPRHLKPDLVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGSTTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFXXXXXXXXXXXSWPVFRWVGGRDDKYFARIGKNAISVYETDTMSLLDKKSLKVDNVMDFCWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDISFYSMRSPNNLGRVSKLATIKGKQANSLYWSPIGRFIILAGLKTLNGLLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTTVHEMENGFNIWSFNGKLLYRIPKDHFYQXXXXXXXXXXXXXXXXXXISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEEWQGWVNEWKRFHEEEKLYRQELRDGEPSDXXXXXXXXXXXXXXXXXXXXXIASFGFEQMD
A9NWV8_______________LWMPIHPETQKTQGYCFIEYNTPQEAQTAKDQTNGYKLDKSHVFAVNMFDDFDKYMKVPNEWIPPETKAYTPGENLQQWLTDEKGRDQYVIRSNTDTEVYWNDPRQLKPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGGTTFNRLMRFAHPQVKLIDFSPGENFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETDTMTLLDKKSLKVDNVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNNVGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFFNVDELETMATGEHFMATDIEWDPTGRYAATSVTVVHEMENGFNIWSFNGKLLYRIPRDHFYQLLWRPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEDWQGWVNEWKRLHEEEKLFRQDLRDGEPSDEEEEYEAEEVEVEELIDVTEEIASFGFEQLD

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1387		33	66		0.997452
1633		16		83	0.999991
1668	88		11		0.923564
1802		12	87		0.999964
1867			88	11	0.923564
1868		11	88		0.923564
1869	88		11		0.923564
1870		11	88		0.923564
1873		88		11	0.923564
1874		88	11		0.923564
1881		12		87	0.992554
1884	87		12		0.992554
1886	87	12			0.992554
1887	87	12			0.992554
1899	83		16		0.994512
1938			81	18	0.999994
1984	37		62		1.0
1994	75	12		12	0.975346
2185	87		12		0.992554
2285	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain