SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23523

Length: 1749 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23523

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box family protein	-	-	2.0e-08	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	unknown [Picea sitchensis]	-	-	1.02208e-27	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, Skp2-like	IPR022364	-	1.02208e-27	51%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 173 aas, putative chimeric sequence,

Fln protein: MPPAADILSTLPEPLLGLILSKIPIREAVGCSVLSKRWRFLYTQIPQLTLSPILLLPNINPDPDPLSVARVEKIISNLLLLHSPDIEAFHLFQNTTNNDCLNNDCLQFTRESVWQWVRYAACRNVQHLTLWIFPDDSDYFHYPEDSYDYRADRQIPPAFFSCTRLITLKLSNYNLTHLPSHFSGFNHLITCSFTEMEFTDDSLAGFISHTPFLENLSLLHYVGLRKPVIVRSQSYTFNYVYRSLLCGCGGFNVKLSEAYNSGYGGGDDTSSENKWSVVSRTFIYSL*

Protein Length: 288

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTACTTGCTCTCAGGTTTGTCAATTGCAATC_-_ATGCCGCCAGCTGCAGATATACTTTCAACCCTTCCAGAGCCATTGCTTGGTCTCATCCTTTCTAAAATTCCAATCAGAGAAGCCGTCGGGTGTTCCGTTCTGTCGAAGAGATGGCGATTCCTCTACACCCAAATTCCCCAACTCACTCTCTCTCCCATTCTTCTTCTGCCCAATATTAACCCAGATCCAGATCCACTCTCTGTTGCAAGGGTGGAAAAAATAATCTCCAACCTCCTCCTGTTGCATTCGCCAGATATTGAGGCTTTTCATTTGTTCCAAAACACTACAAATAATGACTGTCTAAATAATGACTGTCTGCAGTTTACTAGGGAAAGCGTATGGCAATGGGTGAGATACGCCGCCTGTAGGAATGTCCAACACCTGACTCTCTGGATTTTCCCTGATGATAGTGACTATTTCCATTATCCTGAAGATTCCTATGATTACCGTGCCGATAGGCAAATCCCGCCTGCCTTTTTTTCATGCACTCGTCTCATTACTCTCAAGCTTTCGAACTACAACCTTACGCATCTTCCGTCCCATTTCTCTGGATTCAACCATCTCATTACATGCTCCTTCACAGAGATGGAGTTCACAGATGATTCTCTCGCCGGCTTTATCTCTCATACCCCGTTCCTTGAGAATCTTAGCTTATTACACTACGTTGGCCTAAGGAAGCCTGTTATCGTCCGCTCCCAATCTTACACATTTAACTATGTATACCGAAGCCTTTTGTGTGGATGTGGAGGTTTTAACGTTAAACTGTCCGAAGCTTACAACTCTGGATATGGAGGCGGAGATGATACGTCGTCTGAGAATAAATGGAGTGTTGTTTCACGAACTTTCATATATAGTCTCTAA___CATTGAAATGCAGTGTGGGAGCAATGTTGCTGAATTGTGGTTGGATTTTGGTTATGCGGCGACACTTCAAGTTTCAGTAGAGAGAGTTCTTGAGATAGTGGGGGATTTCAAAACATTGAAGAAGCTCGAAATCACTGGCGGGTCGGGACGCCAAAACCAGATGGTTGTTCTCGTTGATAATCTGCTCGAGAGGCTTCCTGGACTAGTGCAACTACTTGTGAGCAGCATGTTTTGTCTGGAGCTAGTAAGAGATCCCACGCTACCATGTGTAATCTCTCTACTAGGTAATCTTCGTAAAGTGAAGGTAAGTATATACAATTTTGATAAAAGGGAAATAAGTATATTGGATAAGTTGCTGAAGAGAGCTTCTGCTCTTGAAATAATGGAAGTGGAATTACCATCATGTTTATGCAATCGACAATCCGCGGTGGGGAGAGCTTCTTCTGTAAAGAAGAAAGCAAATGCCTTTTTGACAAAGCTATTGTATCTGAGTGGAAGTGCTTCCACTCAAGCAAGAATATGTGTGAGCTTTGGAGAGTGGAAAAGCTTCCTGTCAAGCAAGAATAAGTGTGAGATTTTAGTATCTGAATGAAAATATGTGACATACAGAAACTCCAAAAGGCTGTCTGCCATCCTATAATTTATGTTGTAAGTACTGCTCGCCTTGTTGCCATCGCTAAGGATCCTACTAATTGTCTATAGCGGTAAAACATATCTAGGTAATCCACATCTCTTTTTGGTTACGTCTGAAGATGGAATATATATTAGCAGATCAATCTCTGTTCGGTTGATGTAACGTTGGATGCATTACTGTATGAATGTCTGGATGT

Fln Alignment:

sp_v1.1_unigene23523___DDSLAGFISHTPFLENLSLLHYVGLRKP
D5A8V8_______________DDYLACLISHCPLLQKLTIIKCNGLQKP

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
793		16	83		0.994512
798		16	83		0.994512
801		16	83		0.994512
804		16	83		0.994512
901		16		83	0.994512
949	12	87			0.992554
952	87		12		0.992554
980			75	25	1.0
1406		25		75	0.996473
1470		83	16		0.994512
1497	13			86	0.999973
1499			13	86	0.999973
1500	86		13		0.999973
1552	90		9		0.999842
1555		90	9		0.999842
1558			9	90	0.999872
1560	90	9			0.999872
1561		9		90	0.999872
1565			9	90	0.999872
1567		9		90	0.999872
1571	90	9			0.999872
1573		8	91		0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain