SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23508

Length: 1319 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23508

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase cdc2 homolog B n=5 Tax=core eudicotyledons RepID=C5DB66_VITVI	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	cyclin-dependent kinase	-	-	86%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	86%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	86%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	86%
Blast2go	Protein kinase-like domain	IPR011009	-	86%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	86%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	86%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNM1

Fln msg:

Fln protein: MWPLLLSTLSILCSANLVVCYSTVYAVTMDAYEKLEKVGEGTYGKVYKAKDKNTGQLVALKKTRLESDDEGIPPTALREISLLQMLSQDIHIVRLLDVEHTENKNGKPLLYLVFEFMDSDLKKYIDGYRRSHTKVPPSIIKSFMYQLCQGVAYCHSRGVMHRDLKPHNLLVDKQRGVVKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMVRLQALFIGDSEVQQLFKIFSFLGTPNEEVWPGVTKFRDWHIYPEWKPQDISSAVPDLEASGVDLLSKMLVYEPSKRISAKKALEHPYFDDLDKSQF*

Protein Length: 332

Fln nts: CCGTTTAGAGGCAGAGCCAATCTAGGACCACACTCCATTTAT_-_ATGTGGCCTCTGCTTCTCTCGACCCTTAGCATCCTCTGCTCTGCGAATCTTGTTGTTTGTTACTCTACTGTGTACGCTGTAACAATGGATGCCTATGAGAAGTTGGAGAAGGTGGGAGAGGGAACCTATGGGAAGGTGTACAAGGCCAAGGACAAGAACACAGGGCAATTGGTCGCCCTTAAGAAAACAAGGCTGGAGAGCGACGATGAGGGTATTCCTCCCACCGCTCTCCGCGAGATTTCCCTTCTGCAGATGCTTTCTCAGGACATCCACATTGTCAGGCTGTTGGATGTAGAACACACAGAGAACAAGAACGGGAAACCCCTTCTTTACTTGGTTTTTGAATTCATGGACTCTGATCTCAAGAAGTACATTGATGGTTATCGCCGAAGCCACACAAAAGTCCCTCCCAGTATTATTAAGAGCTTCATGTACCAGTTGTGCCAGGGGGTTGCTTACTGCCACAGTCGTGGTGTAATGCACAGGGACCTGAAGCCTCACAATCTCTTGGTGGATAAGCAAAGAGGTGTAGTAAAAATAGCAGATCTTGGCCTCGGAAGAGCATTTACAATTCCTATTAAGAAATATACACATGAGATTGTCACTCTCTGGTACAGGGCTCCTGAAGTTCTTCTGGGGGCTACTCACTACTCTACACCTGTAGACATCTGGTCTGTTGGTTGTATATTCGCTGAAATGGTCCGACTGCAAGCCCTGTTTATTGGAGATTCTGAAGTACAACAACTTTTCAAGATTTTCAGTTTTCTAGGAACTCCCAATGAAGAAGTCTGGCCAGGAGTGACTAAATTCAGGGACTGGCATATCTATCCTGAATGGAAACCCCAAGATATAAGCTCTGCTGTTCCAGACTTGGAAGCAAGTGGTGTAGACCTGTTGTCTAAAATGCTGGTTTATGAGCCGTCCAAACGAATATCAGCTAAAAAGGCATTGGAACATCCCTATTTTGATGATCTGGATAAATCTCAGTTCTAA___CTTCTGAGATCCCTTTTAAGGATTTAAGAAATTCAGGATAGTATATATAAATTACTGCATGCATTGGTGGTTTTGGAAATGTCCCATTTTCTACGAATTCATCTTTGCAGAGGCAAATATATTAGCCAGTATGTGTTTCTTTTGATGTGTTTGGGCAGGCAAACAAGCAATGTTTGGTTGCTGTTGTGGACCTTCTAAATGTTGTATTCCCACACTGGAGAGTAACTTTCTTTAAAATTAATGTTAAGATTTAAAATTAATGTTAAGATGTGATATTATTCAAG

Fln Alignment:

sp_v1.1_unigene23508___MDAYEKLEKVGEGTYGKVYKAKDKNTGQLVALKKTRLESDDEGIPPTALREISLLQMLSQDIHIVRLLDVEHTENKNGKPLLYLVFEFMDSDLKKYIDGYRRSHTKVPPSIIKSFMYQLCQGVAYCHSRGVMHRDLKPHNLLVDKQRGVVKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMVRLQALFIGDSEVQQLFKIFSFLGTPNEEVWPGVTKFRDWHIYPEWKPQDISSAVPDLEASGVDLLSKMLVYEPSKRISAKKALEHPYFDDLDKSQF
A9NNM1_______________MDAYEKLEKVGEGTYGKVYKAKDKNTGQLVALKKTRLESDDEGIPPTALREISLLQMLSQDIHIVRLLDVEHTENKNGKPLLYLVFEYMDSDLKKYIDGYRRSHTKMPPKIIKSFMYQLCQGVAYCHSRGVMHRDLKPHNILVDKQRGVIKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMSRMQALFIGDSEVQQLFKIFRFLGTPNEEIWPGVTKLRDWHIYPQWKPQDISSAVPDLEPSGVDLLSKMLAYEPSKRISAKKALQHPYFDDLDKSQF

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
162	50		50		1.0
828	91	8			0.999807
834	8		91		0.999807
837	91			8	0.999807
840	86	8	4		0.999539
843		8	91		0.999807
847	91	8			0.999807
1262	13			86	0.999973
1265	14	85			0.999981
1306		10		90	0.90298
1312		14		85	0.993533
1315		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain