SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23488

Length: 1861 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23488

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] gb\|AAL15273.1\| AT5g36230/T30G6_9 [Arabidopsis thaliana] gb\|AAM97138.1\| putative protein [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	91%

Source	InterPros	Term	Type	Identity
Blast2go	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	91%
Blast2go	MIF4-like, type 1/2/3	IPR016021	-	91%
Blast2go	Armadillo-type fold	IPR016024	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED4

Fln msg:

Fln protein: MSSKERPTLGGARIKTRKRNIAAPLDPTTFADAVVQIYLEHEGDLELVAKSIESSDLDFSRYGDTFFEVVFIGGRTQPGTIKPEEGDRHPYAVLNCEPARQNILPSVLYIQKILRRRPFLIKNLENVMRRFLQSLELFEDNERKKLAIFTSLTFSQKLSGLPPETVFQPLLKDNLVSKGIVLSFITDFFKEYLVDNSLDDLIALLKRGKIEDNLLDLFPIQKRTTEAFAEHFSKEGLGALVEYNEKKMFDVKLKDMKSSLTTLIAENADISEVIETVKQRHKESKLPDIEVVRILWDAIMDAVQWSGKNQQQNSNLALRQVKTWAKLLDSFCTTAKLQLEIMYKIQIQCYEDAKLMKLFPEIVRSLYDEEVLAEDTILMWFRKGSNPKGRQTFVKSLEPFVKWLEEAEEEE*

Protein Length: 413

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCTGATTTGGGTTTCATTTAGTTGGCGATCTTTTCTTTGCATGACCACCACTTAGTTGTTTCCTGTTTTACTTTGGGTCTACAAAGGGCAGAGGCCGACGAGAACGAAGGACATTGTCCGCTGAGCGAAACGAGAAGAAATAAAAGGGAGCGAGGTGGCCTCAGCAGTCCTCTTTCAACGGCGTCGGATCCAAGCCAGTAGACCCTTATCTCAATTTTGCTGGGAGCTTCAAGGCGTCTGTTTTCACCTTCTCAGTCCTCGTTCTCGTCAAGGTTTTTGATCCTTCCCAGTCGTGGTTT_-_ATGAGCTCGAAGGAGAGACCCACTCTTGGCGGTGCGCGGATTAAGACCCGCAAGCGGAACATAGCAGCTCCCTTAGACCCCACGACATTTGCGGATGCAGTGGTCCAAATCTACCTCGAGCATGAGGGTGACTTGGAACTCGTTGCCAAGAGCATTGAATCCTCAGATCTTGACTTCTCAAGATACGGCGATACCTTTTTTGAGGTGGTCTTCATTGGAGGTCGCACACAACCGGGTACCATAAAACCTGAAGAAGGGGATCGGCATCCTTATGCTGTTTTGAATTGTGAACCTGCAAGGCAGAATATCTTGCCATCTGTTCTGTATATACAGAAGATACTTCGCAGGAGGCCTTTCCTCATCAAGAATCTTGAAAATGTTATGCGAAGGTTTTTACAGTCCCTTGAGCTTTTTGAGGACAATGAAAGGAAAAAACTTGCAATTTTTACTTCACTCACTTTCTCTCAGAAATTATCTGGGCTTCCACCAGAAACCGTTTTTCAACCTCTTCTCAAAGACAACCTTGTTTCCAAGGGGATTGTACTTTCATTTATCACAGATTTTTTCAAGGAGTATCTGGTTGACAACAGTCTTGATGATCTCATAGCATTGCTGAAGCGAGGGAAGATAGAAGATAATCTTCTTGATTTGTTCCCAATACAGAAACGCACCACTGAAGCTTTTGCAGAACACTTCAGTAAGGAGGGTTTGGGCGCTCTTGTCGAATATAATGAAAAGAAAATGTTTGATGTGAAATTAAAGGACATGAAGAGTTCATTAACAACTCTGATTGCAGAGAATGCTGATATTTCAGAAGTCATTGAAACTGTAAAGCAGCGCCATAAAGAGTCAAAGTTACCTGATATTGAAGTAGTGCGTATCTTATGGGATGCTATTATGGATGCTGTACAGTGGTCTGGCAAAAACCAGCAACAAAATTCAAATTTGGCGTTGCGTCAAGTTAAGACATGGGCAAAACTCCTTGACAGTTTCTGTACAACTGCAAAACTACAGTTGGAGATTATGTACAAGATTCAAATTCAATGTTATGAGGATGCTAAACTCATGAAACTGTTCCCTGAAATTGTAAGGTCTCTCTATGATGAGGAAGTTCTTGCTGAAGATACTATTCTGATGTGGTTTCGCAAAGGCAGTAACCCAAAGGGCAGGCAAACCTTTGTGAAGTCACTGGAGCCTTTTGTGAAATGGTTGGAGGAAGCTGAAGAAGAAGAATAA___TGTGAACTTATAATAGAAGCTTAATTATGACTACAATATTGTGGGGGTTAGGATGTTGGTTGCAACTCTTATATGTTGTGTTCATTGGGTATATCAACTGCTTTACATAGATAGTAAGTTTTCTATTGACAATTTATGAGATCCTAGTGCTATACTTATGGAGCATGGTGTGCTAGCAGAAATACTTTAATTGGATTCTATTGGAATTTGCATAAGTATAAATTTATAATCGTTTTTTAGTATCCAAAAAATCTCTTGTGATTTGATTCTTTTGGATGTGTTTGCGACTTAAATGCTTCT

Fln Alignment:

sp_v1.1_unigene23488___MSSKERPTLGGARIKTRKRNIAAPLDPTTFADAVVQIYLEHEGDLELVAKSIESSDLDFSRYGDTFFEVVFIGGRTQPGTIKPEEGDRHPYAVLNCEPARQNILPSVLYIQKILRRRPFLIKNLENVMRRFLQSLELFEDNERKKLAIFTSLTFSQKLSGLPPETVFQPLLKDNLVSKGIVLSFITDFFKEYLVDNSLDDLIALLKRGKIEDNLLDLFPIQKRTTEAFAEHFSKEGLGALVEYNEKKMFDVKLKDMKSSLTTLIAENADISEVIETVKQRHKESKLPDIEVVRILWDAIMDAVQWSGKNQQQNSNLALRQVKTWAKLLDSFCTTAKLQLEIMYKIQIQCYEDAKLMKLFPEIVRSLYDEEVLAEDTILMWFRKGSNPKGRQTFVKSLEPFVKW
D5AED4_______________MSSKERPTLGGARIKTRKRNIAAPLDPTTFADAVVQIYLEHEGDLELVAKSIESSDLDFSRYGDTFFEVVFIGGRTQPGTIKPEEGDRHPHAVLNCEPARQNILPSVLYIQKILRRRPFLIKNLENVMRRFLQSLELFEDNERKKLAIFTSLTFSQKLSGLPPETVFQPLLKDNLVSKGIVLSFITDFFKEYLVDNTLDDLIALLKRGKIEDNLLDLFPIQKRTTEAFAEHFSKEGLGALVEYNEKKMFDVKLKDMKTSLTTLIAENADISEVIETVKQRHKESKLPDIEVVRILWDAIMDAVQWSGKNQQQNSNLALRQVKTWAKLLDSFCTTAKLQLEIMYKIQIQCYEDAKLMKLFPEIVRSLYDEDVLAEDTILMWFRKGSNPKGRQTFVKSLEPFVKW

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
191	89		5	5	0.971054
192	5		95		0.997749
194	90		5		0.965994
196			5	95	0.997749
197		92	5		0.990091
1354			5	94	0.999996
1803			88	8	0.999262
1806	5			44	1.0
1807	5	61	11	16	1.0
1808		76		23	1.0
1809	83			16	0.994512
1810	60		20	20	0.99255
1811	50	25	25		0.995533
1813	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1547	1558	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain