SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23485

Length: 1269 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene23485 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lge1 domain containing protein	-	-	0.0001	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	rna binding	-	-	2.53469e-28	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXS9

Fln msg: your sequence is shorter than subject: 191 - 376

Fln protein: KNDNVPKKKGDRDQGPWKSNVRDQNKSRGSSRTDTRRIPYANDRYSRHLERVHSYLDAPSRPYGGVSGSKRPYSALDDVPRYAEPDLRHSRARLDYDVSAGASLYGGTGYGRLGRAPQSGYSGQQSYGLYDTHQAGTLGGAAVGGIYSPGYGTSSLPGRTDIGGGSYSSLYESRRSGSGYLLGRGSRGYY*

Protein Length: 192

Fln nts: CAAAGAACGATAATGTACCAAAGAAGAAAGGTGATCGTGATCAAGGTCCTTGGAAATCTAATGTTAGGGACCAGAATAAATCTCGGGGATCGTCAAGAACTGATACACGCAGGATCCCGTATGCTAATGATAGATATAGTCGCCATCTGGAACGTGTGCATAGTTATTTGGATGCGCCTAGCCGTCCTTATGGTGGAGTTTCTGGTTCAAAACGTCCATATTCTGCTCTGGATGATGTTCCAAGGTATGCAGAACCAGATTTAAGGCACTCGAGGGCACGCCTAGACTATGACGTTAGTGCTGGTGCTTCGCTTTATGGAGGCACCGGTTATGGCCGGCTTGGTAGAGCGCCCCAATCAGGTTACAGTGGTCAGCAATCTTATGGCTTATATGACACTCATCAAGCTGGCACACTTGGAGGTGCGGCAGTTGGTGGAATTTACTCTCCGGGCTACGGCACCAGTTCTTTGCCAGGCAGGACTGATATTGGAGGTGGTTCATATTCTTCTCTGTACGAAAGCCGGAGATCAGGCAGTGGATATCTGTTGGGCCGTGGCTCAAGAGGATATTACTAG___AATGTAAGTTCAACAACGTACAATGTTCTAGTATCGGTTGGTTTTTTAATACAACCAAATCTTCTGGTGATTTTTATAGCTGATCATGGATTAGATCATGGATTATAATCAAATTTTATTGTTGTTTTTTGTTTTCGTAGTTAAGTGTACGTGAGACCTTGTCTAGTTGTCTTATGCATGTTTATGGCATACAGATGAGTTTTTATGACAAGAGGCACTAGTCGGCCTAGGCTGGAGTAGATCTATATGCCTCTAGATCAATTATTTGGGTATCTTATGACCGGGCACAAGGAGAGATTATGCCTTATTGCATGGAGCTTCAGCTATCTGCCTTGAGTGGCATCTTTGCCATACGAGATTTTATATCTCATGGCTATGACAGATATCTTAAGATTGCGATAGTAATGCAGTATTAGATTGAACATGTCTGATTTATGATATTAAGGATAGTTCTTTTGGAAGTGAGGGAGAATCTAGAGAAGATTCAACAAACGATTTTTGTTATAAGCTGGGATTTGTGTTAAACCTTCTTCAAAGTTCATTGTTGGATGTAAAGCTTTAAATCTTCTAGATGAATTGAGAACCAGCTTGAACTTTTTAAATTTAGCTCTTTGGGCATCCTGTTTTAAATATAATGGATGTTCGCTTGATGCCCTAAATGGAGCTTTAAGACGCTCGAGTGGCTTTCCTGAAC

Fln Alignment:

sp_v1.1_unigene23485___DQNKSRGSSRTDTRRIPYANDRYSRHLERVHSYLDAPSRPYGGVSGSKRPYSALDDVPRYAEPDLRHSRARLDYDVSAGAS-XXXXXXXXXXXRAPQSGYSG----QQSYGLYDTHQA------------GTLGGAAVGGIYSPGYGTSSLPGRTDIGGGSYSSLY
A9NXS9_______________DNAPPRGVSRTVSRRPPYPEESYGRRIDK--PYRDSRGRDYDSVSGSKRPYSAVEEPPRYGEPAMRNSRARLDYGVSASASQYGDYGESVRLGRGSQLGYGGSSARQDSYGLYDGHQSRVGSGYGGSKTYGSLGGSEAGGTYS-SYGNDYLSSGADIGGGSYSSMY

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
625			14	85	0.999981
926	36		63		1.0
958			90	10	0.90298
962	90		10		0.90298
963			90	10	0.90298
964		90	10		0.90298
969	10		90		0.90298
976		88	11		0.923564
981		11		88	0.923564
984	11			88	0.923564
986			11	88	0.923564
1012		71	14		0.984337
1013	14			85	0.993533
1015			85	14	0.993533
1016			14	85	0.993533
1017	28			71	1.0
1019	28			71	1.0
1022	85	14			0.993533
1023	14			71	0.984337
1025		71	28		1.0
1026		71	28		1.0
1028		28		71	1.0
1029	14	14	71		0.984337
1030		14	85		0.993533
1031	71		14		0.984337
1034	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain