SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23470

Length: 430 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene23470
CGTCGTGACCTTGGCTGTCACTCAATCTAAAATTTTTGACGGTTCAGAGAGAGAAGAGAGAGAAAAGAGCGAAGCCCTTACCTGTTGTGCGCTTGGCCGTTACCAGTTGGCTGTGAGTCAGAGCCGTGATTTTATAGGATTGGAGGACGCTGCGAAAGAAAGGAGGTAAGGTAATGGAGATAACTCACAGGATCATAGAGACAAATGGCATCAAAATGCATATTGCTGAGCAAGGATCGGGGCCGGTTGTACTACTGATACATGGCTTCCCCGAGTTGTGGTATTCGTGGCGCCATCAGATTCCTGTGCTTGCAGAGGCAGGATACCATGCAGTGGCCCCAGACATCCGAGGGTATGGAGGCACAGATGCCCCTCTTGGTGCGCAAAATTACACTGTTTTTCATATTGTTGGGGACTTGATTGGCCTGCT

Ace file of the UniGene sp_v1.1_unigene23470

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha/beta hydrolase fold n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M042_CLOB8	-	-	9.0e-33	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	epoxide hydrolase	-	-	1.59748e-43	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Epoxide hydrolase-like	IPR000639	-	1.59748e-43	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY4

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 85 - 319

Fln protein: MEITHRIIETNGIKMHIAEQGSGPVVLLIHGFPELWYSWRHQIPVLAEAGYHAVAPDIRGYGGTDAPLGAQNYTVFHIVGDLIGL

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTAAAATTTTTGACGGTTCAGAGAGAGAAGAGAGAGAAAAGAGCGAAGCCCTTACCTGTTGTGCGCTTGGCCGTTACCAGTTGGCTGTGAGTCAGAGCCGTGATTTTATAGGATTGGAGGACGCTGCGAAAGAAAGGAGGTAAGGTA_-_ATGGAGATAACTCACAGGATCATAGAGACAAATGGCATCAAAATGCATATTGCTGAGCAAGGATCGGGGCCGGTTGTACTACTGATACATGGCTTCCCCGAGTTGTGGTATTCGTGGCGCCATCAGATTCCTGTGCTTGCAGAGGCAGGATACCATGCAGTGGCCCCAGACATCCGAGGGTATGGAGGCACAGATGCCCCTCTTGGTGCGCAAAATTACACTGTTTTTCATATTGTTGGGGACTTGATTGGCCTGCT

Fln Alignment:

sp_v1.1_unigene23470___MEITHRIIETNGIKMHIAEQGSGPVVLLIHGFPELWYSWRHQIPVLAEAGYHAVAPDIRGYGGTDAPLGAQNYTVFHIVGDLIGL
B8LKY4_______________MEITHRIIDTNGIKMHIAEQGSGPVVLLIHGFPELWYSWRHQIPVLAEAGYHAVAPDMRGYGGTDAPLGAQNYTVFHIVGDLIGL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
95	33	33	33		0.997753
97		66		33	0.997452
98		66		33	0.997452
99		33	66		0.997452
101		33	33	33	0.997753
109		33		66	0.997452
110		33	66		0.997452
111	33		66		0.997452
112		66	33		0.997452
113	33			66	0.997452
116		33	66		0.997452
117	66		33		0.997452
118	33	33	33		0.997753
121	20	20			0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain