SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23415

Length: 2500 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23415
GTAAACGGGTATTTCTGAGTTGGCTGTCACTCGCCTTATATTTCAGACCTGGTTTTTGGTCTTGGGTTTCTATTATGGCGATAGAGAGGGACTTCGATGGAGTGGCCGGAGTTTGCAGGTGAAGGAGCCGCTGCTGGTGGCGGTTGTTGGGTTGGGTCGGATTGGGGTGGCGGGTTTGGCAAGCTTTAGTTGTTGTATAGTTCTTTTCCATGTAACTGTTTGAAAGGGGAATAGGGATTTTGCGTCAATAGAACGACTCCGCGCATTTTTCTCATGGATTGCAGCAGCCGGACAATAGGAGTGTCTGAAGCCGTCTTTGGCGGGCGGGCAAAATTCTTGGCTGTAGGTCGTCGCCTGTTCGAATCCCGCAGGCTTCTCTTTTTCTTGGGTATTTGAATAAGGAAGTAGAAGGGCTTTTGAATGAAGGGAATGACGAAGATACTGGGTGGGAAGCTGAGAAAAAACAAGCCATGCCTCACGCCAGATGAACGGAGTAGCCATAATAAATCTAAACATTGCAGAGCTGATAAATCCCAGAGGCGCTGTTATGGCTATGCTCGTTTTTTCCTCTGGGTTTCTATGCTGCTGTATCTGTGCTCTGCAGGGCCGGATTTATTCTGGCTTGCGGCCTGGAAACCCGAGAAGCCTGAGGCTGTGGGGGATGTGATTCAGAAGCCCATGGTTCGAGCCGGTGGCCTGGTTACTAATGTTCTCGCAGAGGAAAATTATACGCAGGGGCGTGGGAAAAAGAATGTGTTTTCTGATTCGAGGGCAGAGTTTTCAGGATTTGTGGATGTAAAAGTATTTGTTTATGAGCTCCCATCCGAGTTCAATGAGGATTGGCTTGTGAACAGCCGTTGCGCCAGTCATCTGTTTGCTGCAGAGGTCGCCATACACCGTGCTCGTGTTGACATAGCTCTGTGCGCGTGTTCGATCCCAAGGAAGCCGATTTTTTCTTTGTGCCTGTCTATGTTTCGTGTAATTTCAGTACCAAGAATGGTTTCCCCGCTCTGGGCCACGCGCGGCCTCTTCTTGGCTCTGCGGTGCGCTACATATCAGAGACCATGCCTTTCTGGAACAGGAGTGGAGGCTCAGATCATGTTTTCGCTGCTACGCATGATTATGGAGCATGCTTCCATGCCATGGAGGATGTTGCAATTCGTGATGGGATACCGGAGTTCCTGCAGAACTCTATAATCTTGCAAACCTTTGGCGTCAAGGGCAAGCACCGTTGCCAGGACGTGGAACACATACAGATTCCTCCTTACGTTGCCCCCAAGCCAATCGAAGCTCTGTGGGCTGCTGCGCCTCCCAAGGCTAAGCGTGATATTTGGGTCTTTTTCAGAGGAAAGATGGAGATTCATCCAAAAAATATCAGCGGCCGTGTATACAGCAAAGGATTGAGAACAGTGATATGGCAAAAGTTTGGGCACAACAGGAGATTCTACATAAAGCGGACGCGATTCGAGGGATACCACACAGAAATCCGCTGTCGCTCAGTTTTCTGCCTCTGCCCGTTGGGGTGGGCACCCTGGAGCCCCCGCATAGTGGAATCTGTGGCTCTGGGCTGCATCCCGGTCATCATCGCGGACAACGTTGCCCTGCCATACCCAGACGTGGTTCCATGGGCGAACATCTCGCTGTCAGTGCCTGAGCGTGACGTGGCGAAGCTGGGCAAGGTGCTGGAACGAGTCACGGCCACAAACCTCACCGCCATACAGAACAACCTCTGGAATGACACCATCCGACGGGCTCTGCTGTTCAATGAGCCATTCCAGCGTGGCGACGCTACATGGCAGGTTCTACAGGGTCTGACACGTAAGCTCAGAAGGTCGTATCGGAACAGGTCCACGTCAGTGTTACTCGAGTAGAAAGGTCAGGATTACCTCATCTCTGGGTATGTTGCATTATTAGGTCTTGCACGTCGTAGATGTGTCAGGCAATAATTCAGCTCCGGCATGTGGATTTTATTTAGTGGCGTTCGGCTTATAAGTTCTGGGACAGAAAATGGAATACGGTGGCAGGGTTACATGTACAGCGATGCAGCTGCTTTTATGACAGATTATTAGCGGTCACATGCAAAAGAACGCCACGCTGGATTGGCAGGCTCGATTGGGTCCCACGCCTTTTTTTCTTGTTGTTGGTCGTGTCTTCGGCAGAGAGAGCATCCGCTGGCAAGTTTGTGGCAGACCCCAGAAAGCTGGGTCAGTGTTTGGGTAAAGAAGCGATCAAAGTTGCAAAAAGCCCAAGAGGTCGATGACGTGTCTAGCGTTCTCCGGGAGGAGAGGAGCCGTGTACGGGTCTCGATTTTGACTTCCGTGAAGGCTTTTATCAATTTCCGCCAACTCAGCATCCATCACGTTCAAACCTTAAAACCTCTTGCTCTATACGCTTAATTATTGAGCTCACCAGTTTCCGATAATATTTTTTTATTTTCATAATTCAAAAATATCATATTCAAAAGGATGAGTCCTCTGAAGGAAACTACGTGATATACATA

Ace file of the UniGene sp_v1.1_unigene23415

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, putative	-	-	67%
FL-Next	sp=Probable glucuronoxylan glucuronosyltransferase IRX7; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	glycosyltransferase-like protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	76%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	76%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exostosin-like	IPR004263	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZUV3

Fln msg: Separated hits, possible frame ERROR between 903 and 921, your sequence is longer than subject: 484 - 448

Fln protein: MKGMTKILGGKLRKNKPCLTPDERSSHNKSKHCRADKSQRRCYGYARFFLWVSMLLYLCSAGPDLFWLAAWKPEKPEAVGDVIQKPMVRAGGLVTNVLAEENYTQGRGKKNVFSDSRAEFSGFVDVKVFVYELPSEFNEDWLVNSRCASHLFAAEVAIHRxxxxxxxVRVFDPKEADFFFVPVYVSCNFSTKNGFPALGHARPLLGSAVRYISETMPFWNRSGGSDHVFAATHDYGACFHAMEDVAIRDGIPEFLQNSIILQTFGVKGKHRCQDVEHIQIPPYVAPKPIEALWAAAPPKAKRDIWVFFRGKMEIHPKNISGRVYSKGLRTVIWQKFGHNRRFYIKRTRFEGYHTEIRCRSVFCLCPLGWAPWSPRIVESVALGCIPVIIADNVALPYPDVVPWANISLSVPERDVAKLGKVLERVTATNLTAIQNNLWNDTIRRALLFNEPFQRGDATWQVLQGLTRKLRRSYRNRSTSVLLE*

Protein Length: 485

Fln nts: GTAAACGGGTATTTCTGAGTTGGCTGTCACTCGCCTTATATTTCAGACCTGGTTTTTGGTCTTGGGTTTCTATTATGGCGATAGAGAGGGACTTCGATGGAGTGGCCGGAGTTTGCAGGTGAAGGAGCCGCTGCTGGTGGCGGTTGTTGGGTTGGGTCGGATTGGGGTGGCGGGTTTGGCAAGCTTTAGTTGTTGTATAGTTCTTTTCCATGTAACTGTTTGAAAGGGGAATAGGGATTTTGCGTCAATAGAACGACTCCGCGCATTTTTCTCATGGATTGCAGCAGCCGGACAATAGGAGTGTCTGAAGCCGTCTTTGGCGGGCGGGCAAAATTCTTGGCTGTAGGTCGTCGCCTGTTCGAATCCCGCAGGCTTCTCTTTTTCTTGGGTATTTGAATAAGGAAGTAGAAGGGCTTTTGA_-_ATGAAGGGAATGACGAAGATACTGGGTGGGAAGCTGAGAAAAAACAAGCCATGCCTCACGCCAGATGAACGGAGTAGCCATAATAAATCTAAACATTGCAGAGCTGATAAATCCCAGAGGCGCTGTTATGGCTATGCTCGTTTTTTCCTCTGGGTTTCTATGCTGCTGTATCTGTGCTCTGCAGGGCCGGATTTATTCTGGCTTGCGGCCTGGAAACCCGAGAAGCCTGAGGCTGTGGGGGATGTGATTCAGAAGCCCATGGTTCGAGCCGGTGGCCTGGTTACTAATGTTCTCGCAGAGGAAAATTATACGCAGGGGCGTGGGAAAAAGAATGTGTTTTCTGATTCGAGGGCAGAGTTTTCAGGATTTGTGGATGTAAAAGTATTTGTTTATGAGCTCCCATCCGAGTTCAATGAGGATTGGCTTGTGAACAGCCGTTGCGCCAGTCATCTGTTTGCTGCAGAGGTCGCCATACACCGTGCxxxxxxxxxxxxxxxxxxTGTGCGCGTGTTCGATCCCAAGGAAGCCGATTTTTTCTTTGTGCCTGTCTATGTTTCGTGTAATTTCAGTACCAAGAATGGTTTCCCCGCTCTGGGCCACGCGCGGCCTCTTCTTGGCTCTGCGGTGCGCTACATATCAGAGACCATGCCTTTCTGGAACAGGAGTGGAGGCTCAGATCATGTTTTCGCTGCTACGCATGATTATGGAGCATGCTTCCATGCCATGGAGGATGTTGCAATTCGTGATGGGATACCGGAGTTCCTGCAGAACTCTATAATCTTGCAAACCTTTGGCGTCAAGGGCAAGCACCGTTGCCAGGACGTGGAACACATACAGATTCCTCCTTACGTTGCCCCCAAGCCAATCGAAGCTCTGTGGGCTGCTGCGCCTCCCAAGGCTAAGCGTGATATTTGGGTCTTTTTCAGAGGAAAGATGGAGATTCATCCAAAAAATATCAGCGGCCGTGTATACAGCAAAGGATTGAGAACAGTGATATGGCAAAAGTTTGGGCACAACAGGAGATTCTACATAAAGCGGACGCGATTCGAGGGATACCACACAGAAATCCGCTGTCGCTCAGTTTTCTGCCTCTGCCCGTTGGGGTGGGCACCCTGGAGCCCCCGCATAGTGGAATCTGTGGCTCTGGGCTGCATCCCGGTCATCATCGCGGACAACGTTGCCCTGCCATACCCAGACGTGGTTCCATGGGCGAACATCTCGCTGTCAGTGCCTGAGCGTGACGTGGCGAAGCTGGGCAAGGTGCTGGAACGAGTCACGGCCACAAACCTCACCGCCATACAGAACAACCTCTGGAATGACACCATCCGACGGGCTCTGCTGTTCAATGAGCCATTCCAGCGTGGCGACGCTACATGGCAGGTTCTACAGGGTCTGACACGTAAGCTCAGAAGGTCGTATCGGAACAGGTCCACGTCAGTGTTACTCGAGTAG___AAAGGTCAGGATTACCTCATCTCTGGGTATGTTGCATTATTAGGTCTTGCACGTCGTAGATGTGTCAGGCAATAATTCAGCTCCGGCATGTGGATTTTATTTAGTGGCGTTCGGCTTATAAGTTCTGGGACAGAAAATGGAATACGGTGGCAGGGTTACATGTACAGCGATGCAGCTGCTTTTATGACAGATTATTAGCGGTCACATGCAAAAGAACGCCACGCTGGATTGGCAGGCTCGATTGGGTCCCACGCCTTTTTTTCTTGTTGTTGGTCGTGTCTTCGGCAGAGAGAGCATCCGCTGGCAAGTTTGTGGCAGACCCCAGAAAGCTGGGTCAGTGTTTGGGTAAAGAAGCGATCAAAGTTGCAAAAAGCCCAAGAGGTCGATGACGTGTCTAGCGTTCTCCGGGAGGAGAGGAGCCGTGTACGGGTCTCGATTTTGACTTCCGTGAAGGCTTTTATCAATTTCCGCCAACTCAGCATCCATCACGTTCAAACCTTAAAACCTCTTGCTCTATACGCTTAATTATTGAGCTCACCAGTTTCCGATAATATTTTTTTATTTTCATAATTCAAAAATATCATATTCAAAAGGATGAGTCCTCTGAAGGAAACTACGTGATATACATA

Fln Alignment:

sp_v1.1_unigene23415___FVDVKVFVYELPSEFNEDWLVNSRCASHLFAAEVAIHRAxxxxxxVRVFDPKEADFFFVPVYVSCNFSTKNGFPALGHARPLLGSAVRYISETMPFWNRSGGSDHVFAATHDYGACFHAMEDVAIRDGIPEFLQNSIILQTFGVKGKHRCQDVEHIQIPPYVAPKPIEALWAAAPPKAKRDIWVFFRGKMEIHPKNISGRVYSKGLRTVIWQKFGHNRRFYIKRTRFEGYHTEIRCRSVFCLCPLGWAPWSPRIVESVALGCIPVIIADNVALPYPDVVPWANISLSVPERDVAKLGKVLERVTATNLTAIQNNLWNDTIRRALLFNEPFQRGDATWQVLQGLTRKLRRSYRNRSTSVL
Q9ZUV3_______________FNNLKIYVYDLPSKFNKDWLANDRCTNHLFAAEVALHKAxxxxxxVRTEDPYEADFFFVPVYVSCNFSTINGFPAIGHARSLINDAIKLVSTQYPFWNRTSGSDHVFTATHDFGSCFHTMEDRAIADGVPIFLRNSIILQTFGVTFNHPCQEVENVVIPPYISPESLHKTQKNIPVTKERDIWVFFRGKMELHPKNISGRFYSKRVRTNIWRSYGGDRRFYLQRQRFAGYQSEI-ARSVFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFPSTVRWPDISLTVAERDVGKLGDILEHVAATNLSVIQRNLEDPSVRRALMFNVPSREGDATWQVLEALSKKLNRSVR-RSNSFL

SNPs (tot: 113)

Position	A %	C %	G %	T %	Probability
49	60	20		20	0.99255
51	60			40	1.0
54		80	20		0.995493
56		20	80		0.995493
57	40		60		1.0
59		20		80	0.995493
60		20		80	0.995493
70			80	20	0.995493
71		20	80		0.995493
72	20			80	0.995493
73		20		80	0.995493
76	20			80	0.995493
77	82		5	11	0.999919
412	87	12			0.992554
413	12		87		0.992554
414	85	14			0.993533
415	85			14	0.993533
416		14	85		0.993533
417	14		85		0.993533
461	10			90	0.90298
563	10	90			0.90298
564		11		88	0.923564
566			88	11	0.923564
568		12	12	75	0.975346
569			25	75	1.0
570		12		87	0.992554
571			12	87	0.992554
572	12		12	75	0.975346
573		87		12	0.992554
575	12			87	0.992554
579		12	87		0.992554
580	12	12	75		0.975346
582			12	87	0.992554
591		12	87		0.992554
592	12	87			0.992554
696		40	60		1.0
914		33	66		1.0
915			33	66	1.0
920	66	33			1.0
922	66			33	1.0
925			33	66	1.0
930	16		66		0.988813
932	16		66	16	0.988813
934			83	16	0.994512
935		16		83	0.994512
936	16		66	16	0.988813
1004	80			20	0.995493
1101	70	29			1.0
1248		78		21	1.0
1280	30	70			1.0
1512	25			25	0.995533
1627		14	85		0.993533
1630			14	85	0.993533
1631	14	85			0.993533
1633	57	14	28		1.0
1635			87	12	0.992554
1640	87			12	0.992554
1702		77	22		0.999999
1801	85		14		0.993533
1813	83		16		0.994512
1837	83	16			0.994512
1853	83	16			0.994512
1958	87		12		0.992554
1971		20	80		0.999996
1974	77	22			0.999999
1975			25	75	1.0
1977			25	75	1.0
1978	25			75	1.0
1979	75	25			1.0
1980		25		75	1.0
1983	75		25		1.0
1988			75	25	1.0
1990	25		75		1.0
1991		25		75	1.0
1994	12		87		0.992554
2013	87			12	0.992554
2014			87	12	0.992554
2015	87	12			0.992554
2016	87		12		0.992554
2017	87	12			0.992554
2019		20	10	70	0.999998
2020			90	10	0.90298
2021			80	20	0.999996
2022	80	20			0.999996
2023	70		30		1.0
2028	10	20	70		0.999998
2029			80	20	0.999996
2032		11	88		0.923564
2034	75			25	1.0
2036			75	25	1.0
2037		25	75		1.0
2038	25			75	1.0
2039		25		75	1.0
2040	75			25	1.0
2134	16	83			0.994512
2136		83		16	0.994512
2141		16		83	0.994512
2190	84	15			1.0
2193		9		90	1.0
2198	9		90		1.0
2200	90	9			1.0
2201			90	9	1.0
2202	90			9	1.0
2203		91	8		1.0
2204	2	83	11	2	1.0
2206		88		11	1.0
2207	86	2	8		0.999998
2208		2	86	8	0.999998
2209	86	8		5	0.999998
2211	91	8			1.0
2212		2	88	8	0.999999
2214	8			91	1.0
2383	14			85	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain