SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23401

Length: 1931 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23401

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	-	-	8.0e-12	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	protein	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT7

Fln msg:

Fln protein: MTARNRRVSAASARAHTRKGKSGSRSAISKGVWKKLAFVSIVGFLAWAYKAIQPPPPLICGTPNGPPVTAPRIRLQDGRHLAYKESGVPKERAKYKIIMTHGFMGSRNDSPFSEELLEELSVYVVSFDRPGYGESDPHPNRSVRSGALDIEGLADQLDLGPKFYVIGISMGGYPTWGCLRYIPHRLAGAALLAPAINYRWPGFPANLSKKAYYQQPLQEQWALRISYYTPWLTYWWMSQKWLPSSRLIQGTWKPLNRQDRELIIKVAASGRSAERVKATLQQGVFESLHREMMIMFGKWDFDPMELSNPFPDNAVPVHIWQGGEDELVPASLQRYIAERLSWIHYHEIPEAGHLFVVMEGVPSRILRSLLFGEESPNSVN*

Protein Length: 382

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTCGGTCCATGTGCTTTTATGCAGAACTTTGATCTAAAACAGAGATGGTTATAAAACATTGAAAATCTCACGATTTTACGGCTCTGGTCTTCAAAGTTTCAGGGTATAGTAAGTGATCTTAATCATGTGTGAACAGGTTTCCTGTGTATATACTCCTCTGCGATTTGAAACAAGAGTCTGGTCTGCTTCAACCTCATTTAGAGCTCCAATTTCGTCATATTGCTTGTACTAACTATGCAGGACATTGACACTGCTCGAATCCATAACACGCTTTGAGGCATCCTTTATTTGGGTTTTCTTGAATTAGATTTAATAGAAG_-_ATGACTGCTAGAAACCGAAGGGTTTCCGCTGCCTCTGCCCGAGCCCACACCAGAAAGGGCAAGTCAGGCAGCAGATCTGCAATCAGTAAAGGTGTGTGGAAAAAATTGGCCTTTGTTTCAATCGTGGGTTTTCTTGCATGGGCATACAAGGCCATCCAGCCACCTCCTCCTCTTATCTGTGGAACCCCCAATGGCCCTCCAGTGACTGCTCCTCGTATTCGCCTTCAAGATGGAAGACATTTGGCCTATAAGGAAAGCGGAGTTCCAAAAGAGAGAGCCAAGTATAAGATCATCATGACACATGGTTTTATGGGATCCAGAAATGATTCCCCCTTTTCTGAGGAGCTACTGGAAGAGCTGAGCGTCTATGTTGTAAGCTTTGATAGGCCTGGGTATGGAGAAAGCGATCCTCATCCTAATAGGTCTGTGAGGAGTGGAGCTCTTGACATTGAAGGCCTTGCAGACCAGCTTGATCTTGGCCCCAAGTTTTACGTGATAGGCATCTCCATGGGGGGATATCCGACATGGGGATGCCTCAGATATATCCCACACAGATTAGCAGGTGCTGCACTCTTAGCACCTGCAATAAATTACAGGTGGCCTGGCTTCCCAGCTAATTTATCTAAAAAAGCTTATTATCAGCAACCTTTACAGGAACAATGGGCGCTTAGGATTTCCTACTATACCCCTTGGCTGACTTATTGGTGGATGTCCCAAAAGTGGCTCCCTTCTTCAAGGCTTATTCAAGGGACATGGAAGCCTCTAAACCGACAAGATAGGGAGCTAATCATCAAAGTTGCTGCGAGTGGAAGATCTGCTGAACGTGTAAAGGCAACACTGCAACAGGGAGTTTTTGAGTCTTTACATCGAGAAATGATGATCATGTTCGGCAAGTGGGATTTTGATCCTATGGAACTCAGCAACCCATTTCCTGACAATGCTGTTCCAGTGCACATATGGCAAGGGGGTGAAGATGAACTGGTGCCAGCGTCCTTGCAGCGTTACATTGCTGAACGGCTTTCATGGATTCACTATCACGAGATTCCGGAGGCTGGGCACTTATTTGTCGTAATGGAGGGCGTTCCTAGTCGTATATTGAGGAGTCTTTTGTTTGGAGAGGAATCTCCAAACAGTGTTAATTAA___GCCTGGGGCGTCTAGGGTACTCCTTTGGAGACCTGGTGGAATTTCTATTTTCAGTATTTGGAAATGAAAAGTTGGGTGCTTTTCAGCTCTGAGTCAGGTTAACCCAGTAAGGTCCTGATCAGCCCTTCCAATGTTCCTTTCCACGGCAAATATTGCAAACAGCTATGAGGGATTTGTTATAGCATATTTTCTTTAGTTTTTTTTGTTAAACTTATTGGAACATATTATGACAACCATTCCATTAGTGTCTTTTTTCTCAATAAGTTGGAATTCCTTCCACGATTTTTTTGCCATTTACCCTGTTTTCAGAGGGCCTGCACTGTGCATTATGTGTGAATGTTTGAAACTATTTCTGTCAAGATGTTCTATCTTATGTAACAGTAAATATTTATGTTAAGCTCACATGAATCAAATAGGGATTGGAGGCTTTAATATTTTGACTG

Fln Alignment:

sp_v1.1_unigene23401___KGKSGSRSAIS-KGVWKKLAFVSIVGFLAWAYKAIQPPPPLICGTPNGPPVTAPRIRLQDGRHLAYKESGVPKERAKYKIIMTHGFMGSRNDS-PFXXXXXXXXXXXXXXFDRPGYGESDPHPNRSVRSGALDIEGLADQLDLGPKFYVIGISMGGYPTWGCLRYIPHRLAGAALLAPAINYRWPGFPANLSKKAYYQQPLQEQWALRISYYTPWLTYWWMSQKWLPSSRLIQGTWKPLNRQDRELIIKVAASGRSAERVKATLQQGVFESLHREMMIMFGKWDFDPMELSNPFPDNAVPVHIWQGGEDELVPASLQRYIAERLSWIHYHEIPEAGHLFVVMEGVPSRILRSLLFGEE
A9NWT7_______________KGKSDKRSAASSRGILRKLAIVSIAGFLACAYKAIQPPPSAICGSPDGPPVTAPRIRLQDGRHLAYKESGVPRERAKYKIIMTHGFTGSRNDTFQASEELMEELGVYLVTFDRPGYGESDPHPKRSVRSAAFDIEEFADQLDLGPKFYVMGFSLGGHAIWGCLKYIPNRLAGAALLAPVINYRWPGFPANLSEEAYYEQARQDQWALRVPYYAPWLTYWWMSQKWFPSSSVIQGTWKPLNRHDRELGLKLAASGRSPERLKAALQQGVFESLHRDLMVMFGKWDFDPMEL-NPFPNNDVPVHIWQGDEDALVPVTLQRYIGEKLSWIHYHELPEVGHLLNLMEAIPDRILKCLLLGEE

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
39			25	75	0.996473
85	83		16		0.994512
87		16		83	0.994512
90	83			16	0.994512
91	83		16		0.994512
93		16		83	0.994512
97	83			16	0.994512
98		83	16		0.994512
100	83	16			0.994512
102			16	83	0.994512
104		16		83	0.994512
107			83	16	0.994512
108		16	83		0.994512
109	16	83			0.994512
249		46	53		1.0
296	90		9		1.0
298	90	9			1.0
299	64		35		1.0
300		90	9		1.0
307		3	10	86	1.0
309	86			13	1.0
316	3	3	82	10	1.0
320		92	7		0.999602
321	7	92			0.999602
325	92	8			0.999718
489		34		65	1.0
1234	88		11		0.923564
1238		11		88	0.923564
1240	88			11	0.923564
1246	11		88		0.923564
1247		11	88		0.923564
1360			10	89	1.0
1363	85	10	3		1.0
1370	89			10	1.0
1373			89	3	0.998606
1374			92	7	0.999532
1375	5	95			0.997749
1420		2		93	0.985381
1421		4		95	0.997218
1423		4	95		0.997218
1747		12	87		0.992554
1755		14		85	0.993533
1756		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain