SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23393

Length: 987 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23393

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CCAAT-box binding factor HAP3-like protein n=1 Tax=Selaginella sinensis RepID=A9P3Y3_9TRAC	-	-	64%
FL-Next	tr=CCAAT-box binding factor HAP3-like protein; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	78%
Blast2go	ccaat-box binding factor hap3-like protein	-	-	75%

Source	InterPros	Term	Type	Identity
Blast2go	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	75%
Blast2go	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	75%
Blast2go	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	75%
Blast2go	Histone-fold	IPR009072	-	75%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
249		25	75		1.0
303	10			90	0.90298
304		10	90		0.90298
305		10		90	0.90298
308		90	10		0.90298
311	90	10			0.90298
312	90			10	0.90298
313			10	90	0.90298
315		10		90	0.90298
317		10		90	0.90298
366		9	90		0.999872
367		14	85		1.0
368	80		4	9	0.999537
369	85			14	1.0
371	90		9		0.999872
374	85		10	5	0.999793
671		12		87	0.992554
690		12		87	0.992554
721		12	87		0.992554
726		87	12		0.992554
728			14	85	0.993533
729	85			14	0.993533
730	85		14		0.993533
838	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
752	764	TGTT TGTT TGTT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain