SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23391

Length: 1964 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23391
CAACAGCGCGCTCACAGTCACGTGGAAGCAACATCTCTTCCATTCATGTCTATATAAATAGCTAACTCGGCGATACAGATCTCACATAGTGGAAGACAGCCGAGAGCCCTTTCTCTCCATCTGAGCTTTTGGAGGCCAAGATGATGCTGGGGATCAGGAGATTGGTGGGTGCCAATGGCATCTTCAATGGCAAAAAGAAGAGGATTGGAATTGGCATGAGGGCCATGGCATCAGTCTCTGCTGCTGAGAGCCATGAACCTTCTGTTGTCCTGCCTCAGATGCCTGCATTTGATTACAAGCCCCAGCCTTACACGGGTCCCTTAGCCGAGGAGATATTGAAGAAGAGGAAGCAGTTCCTCGGGCCTTCCAATTTTTATTTCTATGAGAAACCTTTGAATATTGTTGAAGGAAAGATGCAGTACTTGTTTGACGAAGATGGGCGTCGATACCTGGATGCTTATGCAGGCATCGTCTGTATTTCCTGTGGGCACTGTCACCCTGAAATTGTTGATGCTATTATAAAGCAAACAAAGCTCCTGCAGCATGCTACCACAATATATCTTCATCATGCGGTGACAGATCTTGCAGAGGCATTAGCTGCAAAGATGCCAGGAAATCTTAAGGTAGTTTTCTTTGTAAATTCAGGTACGGAGGCAAATGAATTAGCTACGATGATGGCCCGGTTGTACACTGGTAACCATGATATGATTTCAGTGAGAAATGGATACCATGGAAATGGTTCTAACACAATGGGATTGACCAGTCAGAGCAAATGGAAATTTAACGTTGTGCAGAGTGGAGTGCATCACGCAGTCAACCCTAACCCATATCGAGGGATTTTTGGCGCTGATGGGCCACAGTATGCTAAAGATGTTCAAGATATTATCGACTTTGGAACCACTGGACGTGTTGCTGGCTTTATTGCAGAAACTATACAGGGTGTTGGTGGAGCAGTAGAACTAGCACCTGGATACTTGCGAGCAGCTTATGATATTGTACGGAAGGCTGGAGGTGTTTGTATATCTGATGAGGTTCAGACAGGATTTGGTCGTATGGGAAGTCATTACTGGGGCTTTGAAACACAAGGTGTTATCCCTGACATTGTAACTGTGGCCAAGGGTATTGGGAATGGCCTTCCTATTGGTGCTGTTGTCACAACTCCAGAAATTGCACAAGTTTTAACACAACGATCACACTGTGTTACTTTTGGTGGAAATCCAGTCAGTACTGCTGGCGGCCATGCTGTGCTAAAAGTTTTAGACAAAGAAAAACGACAAGAACATAGCGCTGTTGTGGGTGCTCATCTAATCAACCGTTTAAGAGAACTTCAAGACAAATATGAAATCATTGGAGATGTAAGGGGAAGAGGTCTAATGATTGGGGTTGAGCTTGTGACTGATCGAACATCAAAAACACCAGCCAAAGAAGAGACTTCACTTGTGTTTGAGAAGATGAAAGACCTGGGAGTGTTGGTTGGAAGAGGGGGAATGTATGGAAATGTCTTCAGAATCAAGCCTCCAATGTGCTTCACAAAGGAAGATTCTGATTTTCTTGTGGATGTTATGGACTATTCACTGTCAAAACTTTAATTTACTTTTCATAGTTTGGAACAGGTTCGTACTTGTTTCAATAAATTTGCAACTATAAGTGTTGCAATAACATCTGAACTTTTAAGTTATTAGGGAATACATACTCCAGAGTAGATGGGACTTTCAGCAATACTTTCCCTTGGTGCACTGTCCAAACTTTAATGTGTTACACAGTTTGAAACAGTTTGTACTTTGTTTCAATAAATTTGCAACTAAATTTGTTGCAGTAATATCTGAGCGCATGAGACACCACCTCGTTGTCTCTTCGTCTCAGACACTGTAGTAAGCTCCTGTAAATCTTACAATGTGATTATGTGATGATAACAGCTGTGACTCTTATTGGTTTAATGTTGCTTGTGATGATGTCAGTGACTG

Ace file of the UniGene sp_v1.1_unigene23391

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alanine-glyoxylate aminotransferase, putative n=1 Tax=Ricinus communis RepID=B9T1D1_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	86%
Blast2go	Glycine, serine and threonine metabolism	00260	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	arginine catabolic process to glutamate	GO:0019544	Biological Process	86%
Blast2go	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Aminotransferase class-III	IPR005814	-	86%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	86%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	86%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg:

Fln protein: MMLGIRRLVGANGIFNGKKKRIGIGMRAMASVSAAESHEPSVVLPQMPAFDYKPQPYTGPLAEEILKKRKQFLGPSNFYFYEKPLNIVEGKMQYLFDEDGRRYLDAYAGIVCISCGHCHPEIVDAIIKQTKLLQHATTIYLHHAVTDLAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNGSNTMGLTSQSKWKFNVVQSGVHHAVNPNPYRGIFGADGPQYAKDVQDIIDFGTTGRVAGFIAETIQGVGGAVELAPGYLRAAYDIVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTVAKGIGNGLPIGAVVTTPEIAQVLTQRSHCVTFGGNPVSTAGGHAVLKVLDKEKRQEHSAVVGAHLINRLRELQDKYEIIGDVRGRGLMIGVELVTDRTSKTPAKEETSLVFEKMKDLGVLVGRGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL*

Protein Length: 484

Fln nts: CAACAGCGCGCTCACAGTCACGTGGAAGCAACATCTCTTCCATTCATGTCTATATAAATAGCTAACTCGGCGATACAGATCTCACATAGTGGAAGACAGCCGAGAGCCCTTTCTCTCCATCTGAGCTTTTGGAGGCCAAG_-_ATGATGCTGGGGATCAGGAGATTGGTGGGTGCCAATGGCATCTTCAATGGCAAAAAGAAGAGGATTGGAATTGGCATGAGGGCCATGGCATCAGTCTCTGCTGCTGAGAGCCATGAACCTTCTGTTGTCCTGCCTCAGATGCCTGCATTTGATTACAAGCCCCAGCCTTACACGGGTCCCTTAGCCGAGGAGATATTGAAGAAGAGGAAGCAGTTCCTCGGGCCTTCCAATTTTTATTTCTATGAGAAACCTTTGAATATTGTTGAAGGAAAGATGCAGTACTTGTTTGACGAAGATGGGCGTCGATACCTGGATGCTTATGCAGGCATCGTCTGTATTTCCTGTGGGCACTGTCACCCTGAAATTGTTGATGCTATTATAAAGCAAACAAAGCTCCTGCAGCATGCTACCACAATATATCTTCATCATGCGGTGACAGATCTTGCAGAGGCATTAGCTGCAAAGATGCCAGGAAATCTTAAGGTAGTTTTCTTTGTAAATTCAGGTACGGAGGCAAATGAATTAGCTACGATGATGGCCCGGTTGTACACTGGTAACCATGATATGATTTCAGTGAGAAATGGATACCATGGAAATGGTTCTAACACAATGGGATTGACCAGTCAGAGCAAATGGAAATTTAACGTTGTGCAGAGTGGAGTGCATCACGCAGTCAACCCTAACCCATATCGAGGGATTTTTGGCGCTGATGGGCCACAGTATGCTAAAGATGTTCAAGATATTATCGACTTTGGAACCACTGGACGTGTTGCTGGCTTTATTGCAGAAACTATACAGGGTGTTGGTGGAGCAGTAGAACTAGCACCTGGATACTTGCGAGCAGCTTATGATATTGTACGGAAGGCTGGAGGTGTTTGTATATCTGATGAGGTTCAGACAGGATTTGGTCGTATGGGAAGTCATTACTGGGGCTTTGAAACACAAGGTGTTATCCCTGACATTGTAACTGTGGCCAAGGGTATTGGGAATGGCCTTCCTATTGGTGCTGTTGTCACAACTCCAGAAATTGCACAAGTTTTAACACAACGATCACACTGTGTTACTTTTGGTGGAAATCCAGTCAGTACTGCTGGCGGCCATGCTGTGCTAAAAGTTTTAGACAAAGAAAAACGACAAGAACATAGCGCTGTTGTGGGTGCTCATCTAATCAACCGTTTAAGAGAACTTCAAGACAAATATGAAATCATTGGAGATGTAAGGGGAAGAGGTCTAATGATTGGGGTTGAGCTTGTGACTGATCGAACATCAAAAACACCAGCCAAAGAAGAGACTTCACTTGTGTTTGAGAAGATGAAAGACCTGGGAGTGTTGGTTGGAAGAGGGGGAATGTATGGAAATGTCTTCAGAATCAAGCCTCCAATGTGCTTCACAAAGGAAGATTCTGATTTTCTTGTGGATGTTATGGACTATTCACTGTCAAAACTTTAA___TTTACTTTTCATAGTTTGGAACAGGTTCGTACTTGTTTCAATAAATTTGCAACTATAAGTGTTGCAATAACATCTGAACTTTTAAGTTATTAGGGAATACATACTCCAGAGTAGATGGGACTTTCAGCAATACTTTCCCTTGGTGCACTGTCCAAACTTTAATGTGTTACACAGTTTGAAACAGTTTGTACTTTGTTTCAATAAATTTGCAACTAAATTTGTTGCAGTAATATCTGAGCGCATGAGACACCACCTCGTTGTCTCTTCGTCTCAGACACTGTAGTAAGCTCCTGTAAATCTTACAATGTGATTATGTGATGATAACAGCTGTGACTCTTATTGGTTTAATGTTGCTTGTGATGATGTCAGTGACTG

Fln Alignment:

sp_v1.1_unigene23391___MMLGIRRLVGANGIFNGKKKRIGIGMRAMASVSAAESHEPSVVLPQMPAFDYKPQPYTGPLAEEILKKRKQFLGPSNFYFYEKPLNIVEGKMQYLFDEDGRRYLDAYAGIVCISCGHCHPEIVDAIIKQTKLLQHATTIYLHHAVTDLAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNGSNTMGLTSQSKWKFNVVQSGVHHAVNPNPYRGIFGADGPQYAKDVQDIIDFGTTGRVAGFIAETIQGVGGAVELAPGYLRAAYDIVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTVAKGIGNGLPIGAVVTTPEIAQVLTQRSHCVTFGGNPVSTAGGHAVLKVLDKEKRQEHSAVVGAHLINRLRELQDKYEIIGDVRGRGLMIGVELVTDRTSKTPAKEETSLVFEKMKDLGVLVGRGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL
A9NW66_______________MMLGIRRLVSANGIFNGSKKRIGISMRAMTSVSAAESHEPAVLLPQMPAFDYKPQPYTGPLADEILKKRKQFLGPSNFYFYDKPLNIVEGKMQYLFDEDGRRYLDAFAGIVCISCGHCHPEVVDTIVKQTKLLQHTTTIYLHHAVTELAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNSANTMGLTSQSKWKFNIVQSGVHHAVNPNPYRGVFGSDGPQYAKDVQDIIEFGTTGRVAGFIAETIQGVGGAVELAPGYLPAVYDSVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAQVLTQRSHCVTFGGNPVCTAGGHAVLKVLDKEKRQEHCAVVGAHLINRLKELQDKYEIIGDVRGRGLMVGVELVTDRTSKTPAREETSLAFERMKDLGVLVGKGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
349	80	20			0.995493
351		80		20	0.995493
352	80	20			0.995493
355			20	80	0.995493
359		75		25	0.996473
362		25	75		0.996473
363		75		25	0.996473
364		75	25		0.996473
366		25		75	0.996473
533		33	66		1.0
1522		7		92	0.999602
1527			7	92	0.999602
1529		92	7		0.999602
1532	92	7			0.999602
1533	92			7	0.999602
1534	92			7	0.999602
1537	88	8			0.999262
1538	92			8	0.999718
1540	92			8	0.999718
1541		8		92	0.999718
1542	8			92	0.999718
1825		15		84	1.0
1877	8		80		1.0
1887	56		43		1.0
1893		82	17		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain