SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23345

Length: 1209 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23345

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 n=2 Tax=Pinaceae RepID=Q9ZRS7_PSEMZ	-	-	90%
FL-Next	tr=Ubiquitin-conjugating enzyme E2; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	98%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	0.0	93%
Blast2go	ligase activity	GO:0016874	Molecular Function	0.0	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9ZRS7

Fln msg:

Fln protein: MSSTSTPNRGLTKIATNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLQPSPLHAHIYSNGHICLDILYDSWSPAMTVSSICMSILSMLSSSTVKQRPPDNDRYVKNCRNGRSPKETRWWFHDDKV*

Protein Length: 162

Fln nts: CGTCGTTACCTTGGGGTGAGAGACATTTATTTACTCTCGTCGTGACCTTGGCTGTCACTCAGTTTTCGGGAGCTGGAGCTCGTGTGTTCGAATTTATTCTGGGGGTTTTGCTCTTGCGGGCGATGAGTGATCTTCTTGGTCTGCCAGGCCACCCAAAGGGTAGACTGTATGCAGTAAAATTCCTTTTGTAATAGTGTGGAAGATTGAGAAGACCTGCCACGCTCGAAGTGCGAAGTCACCTCCATTACCATTAAAAGTTCTGCGCCACC_-_ATGAGCAGTACCTCGACACCCAACAGAGGTCTCACCAAAATAGCCACGAATAGACTCCAGAAGGAGCTTGTTGAATGGCAAGTAAACCCTCCTGCAGGGTTCAAACATAAAGTCACCGACAATCTGCAAAGGTGGATTATTGAAGTTACAGGTGCCCCTGGCACTCTTTATGCAAATGAAACTTACCAGCTTCAAGTGGATTTTCCCGAGCATTATCCCATGGAAGCCCCACAGGTTATTTTCCTCCAGCCGAGTCCTCTGCATGCTCACATTTACAGCAACGGTCACATCTGTCTAGATATTCTTTATGACTCCTGGTCTCCAGCCATGACCGTGAGCTCTATCTGCATGAGCATCCTCTCAATGTTATCAAGCTCTACTGTCAAGCAAAGGCCACCAGATAATGACAGATATGTCAAAAATTGCAGGAATGGGAGATCACCTAAAGAGACCCGATGGTGGTTCCATGATGACAAGGTGTAA___TAACTGCAGTGTAATTGTTCACTACTGAATAAAGTACGGGTTTCGGTTTTTTGCCAGAATCTTTGGGCAATATATCGAGCTGATTTTAGGCTGCTTCTGCATGTGGAGTTTAGACTTTGTATATGGTACCACAAATACTGGTGGACAGTTTCAGGAGCCAGCTTCTGGGAACATTTGAGCTTTAATATTCTGAGTGACTCATAGTTTTGACGACTGGAAGTCATGTAAAACATTATTTATCATAAGAGATAAGTTATTCTAGCTGATTATTCAATCTGTTAGGTATTTAGATACATAGTACTTCAATCTTTCTTGTTTCCATGTTTTCTTTCTCTGTTTGGTAGAAGGATTTAGGTGTGAAGTATGAAATTTGAAATATCAACGTATGAAACAGGTGCCCTAATAACCTAATGAGATGGGTGTATGATTGTATGCATATGAGATAGATGTACTATGA

Fln Alignment:

sp_v1.1_unigene23345___MSSTSTPNRGLTKIATNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLQPSPLHAHIYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPPDNDRYVKNCRNGRSPKETRWWFHDDKV
Q9ZRS7_______________MSSTSTPNRGLTKIATNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLQPSPLHAHIYSNGHICLDILYDSWSPAMTVSSVCMSILSMLSSSTVKERPPDNDRYVKNCRNGRSPKETRWWFHDDKV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
47	66			33	1.0
48		66	33		1.0
49	33	66			1.0
53	33		66		1.0
57		33		66	1.0
58	33	66			1.0
63	60			40	1.0
148	88		11		0.923564
367	85		14		0.993533
659		90		10	0.90298
798		80		20	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain