SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23302

Length: 723 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23302

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	binding protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	76%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
118	85		14		0.993533
125		85	14		0.993533
127		14	85		0.993533
131	85		14		0.993533
136	87			12	0.992554
137	75	25			1.0
138			87	12	0.992554
139	75	12		12	0.975346
140	12		87		0.992554
142		12		87	0.992554
147	87		12		0.992554
148		12		87	0.992554
151			87	12	0.992554
152		12	87		0.992554
154	87	12			0.992554
155			87	12	0.992554
158	12		87		0.992554
397			88	11	0.999952
414	64		35		1.0
433		86		13	0.999973
634		33	66		1.0
638			25	75	1.0
671		20		80	0.999996
688		33		66	0.997452
689		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain