SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23280

Length: 2129 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23280
CGTCGTGACCTTGGCTGTCACTCATCGTTTCGTCACCAATAAAGTGGCCTACCGCGGTCCCCCAAGCTTCAATTTCAATTATTCACACACACTCACGCCACCCCTGATGCATATGTATGCGTCGTGACCTTGGCTGTCACTCAGTCCTCTGCCTAACTACACTGACTCTCTCAATACCCTCTCCTCCAATTCTTTCTTCTGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCCCTCTCCTCCTATTCTTTCTTCCGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCAAATTCTATATATTTATTTTTTCACTATTCCACCTCACTCCGCGGAGACACTAAAACAACAGACACAGACAGGCATAAGCCAGTTATTTCTCCAAAATCTATGAATGGAAGGCAGGGAATCCAATGGACCTTCCCCATTCAATTCCTACTATCACAGACCTTACACTCCCAATCCCAATCCCAATCTCAATACACCCAATTCAAATCCTGCCACCAATGCTGTCTTTGCAGCCCCCCAGAGACCCATGGTGAGCCCTGAACAGTCCCTCCCTATGGTTAATAACAATAATACATCCAATGCCTCCGCTTCCTCCCCTCTGTATTCCGAGGGCCCAACTGCAATTTTTAATCATCCAGGGAGTGGAAGAGCGAGTCTGGCGGGTTCAGAGACCTTAAAGAGGAAGAGGGGAAGGCCTAGAAAGTATGGCACAGATGTTGATGGATTTGGTAATGTGGGTTTGGGCTTATCATCCCCATCATCACCATTTTCAGATAAAAAAGCGCGTGGGTCTGGCAAAAAAGCTCAGATGGTTGCACTTGGGTGTGCAGGGCATGGATTCATTCCACATGTCATCACAATTGCAGCAGGGGAAGATGTCTGTAAGAAAATAATGGCTTTTATGCAACATGGGCCATGGGCAGTTTGTGTACTTTCTGCTAATGGAGCTATTTCAAATGTGACTCTTCGCCAACCAGCCATGTCGGGTGGCACTGTAACATATGAGGGGCGGTTTGAGATTTTGTCATTGTCAGGTTCCTTTCTACTCAATGATGCTGGAGGAACTCCAACAAGAACTGGTGGCCTTAGTGTTTCACTAGCTGGGTCTGATGGTCGTGTTATTGGGGGCGGTGTGGGAGGTCTTCTCATGGCAGCAAGCCCTGTACAGGTAGTAGTTGGTACCTTCCTAGTTGATAACAAGAAGGATCTTGGGCGGGTTGGAAATGGTGAACCTTCCATCGGCACGTTATCAGGATCTGTTTCAGGGGGGTCTCCTTCACCTTCCGTTGCTGCACAATCTCGGGCAGAAGCTTCTGCTGCTACTAATCTGAGAAAAGGAGCTGAAGGTGAGCAAAATACTGGAGGTAGTAGTTATAATATGCAACCTCAAGGGTTAAGAATGATGTCCCTACAGGACTGGGCAGGTACTCATTTTGGGACCGAAACAAAGAGTGACACAGAGACAGCCTTGACAGGCAGAGCAAAACCAAGGGACCGAGATGATGGATCTAGATTTAACAAAGTGGACCAGGAAGGAGAGCGTAGAGGCCAACATATTACATTTGAGAACTAATGTTCTTGAGAAAATGTTTCCTAGAAAGAGGCATTCTGGCATGGTTAGAGGTTGATATAAAAGAGCTGGAGTGTCTTCATAAAGAGAGATTTTTGTATTTTTATTTTTGTCAGCTATTTCCATGTGTTGTAGACTAGATCTCTTTCTTCTGTAAACATAGTGTTTTAATTTTAAAATCTTTCATTGAGAGTCATCTTACCAAAAGTATATTGATGATGCTACATCATAACATGTTGTTCATATTAGATTGTAGCTGTTGGTTATATATCCAAGATTTTAAATTGTAACTACGCATCATTGAATGCCTTTTACCACCAGTGCATGGTAGAATTCCACTTTTCTTCCTATATAGACAACTGTTTTTGATACTTACCTCTGAGAGTCTAAACTCCAAAACTGGGAAACACCCAAATAGATGTAGCTGATTATCTCATAATTTGCGTTAAATGCAAGATAGGTAAGCACTGAATAATTTGTTATAGTT

Ace file of the UniGene sp_v1.1_unigene23280

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	dna-binding family protein at-hook protein 1	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF296	IPR005175	-	0.0	68%
Blast2go	AT hook, DNA-binding motif	IPR017956	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z4

Fln msg:

Fln protein: MEGRESNGPSPFNSYYHRPYTPNPNPNLNTPNSNPATNAVFAAPQRPMVSPEQSLPMVNNNNTSNASASSPLYSEGPTAIFNHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVGLGLSSPSSPFSDKKARGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLNDAGGTPTRTGGLSVSLAGSDGRVIGGGVGGLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSIGTLSGSVSGGSPSPSVAAQSRAEASAATNLRKGAEGEQNTGGSSYNMQPQGLRMMSLQDWAGTHFGTETKSDTETALTGRAKPRDRDDGSRFNKVDQEGERRGQHITFEN*

Protein Length: 397

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTTCGTCACCAATAAAGTGGCCTACCGCGGTCCCCCAAGCTTCAATTTCAATTATTCACACACACTCACGCCACCCCTGATGCATATGTATGCGTCGTGACCTTGGCTGTCACTCAGTCCTCTGCCTAACTACACTGACTCTCTCAATACCCTCTCCTCCAATTCTTTCTTCTGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCCCTCTCCTCCTATTCTTTCTTCCGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCAAATTCTATATATTTATTTTTTCACTATTCCACCTCACTCCGCGGAGACACTAAAACAACAGACACAGACAGGCATAAGCCAGTTATTTCTCCAAAATCTATGA_-_ATGGAAGGCAGGGAATCCAATGGACCTTCCCCATTCAATTCCTACTATCACAGACCTTACACTCCCAATCCCAATCCCAATCTCAATACACCCAATTCAAATCCTGCCACCAATGCTGTCTTTGCAGCCCCCCAGAGACCCATGGTGAGCCCTGAACAGTCCCTCCCTATGGTTAATAACAATAATACATCCAATGCCTCCGCTTCCTCCCCTCTGTATTCCGAGGGCCCAACTGCAATTTTTAATCATCCAGGGAGTGGAAGAGCGAGTCTGGCGGGTTCAGAGACCTTAAAGAGGAAGAGGGGAAGGCCTAGAAAGTATGGCACAGATGTTGATGGATTTGGTAATGTGGGTTTGGGCTTATCATCCCCATCATCACCATTTTCAGATAAAAAAGCGCGTGGGTCTGGCAAAAAAGCTCAGATGGTTGCACTTGGGTGTGCAGGGCATGGATTCATTCCACATGTCATCACAATTGCAGCAGGGGAAGATGTCTGTAAGAAAATAATGGCTTTTATGCAACATGGGCCATGGGCAGTTTGTGTACTTTCTGCTAATGGAGCTATTTCAAATGTGACTCTTCGCCAACCAGCCATGTCGGGTGGCACTGTAACATATGAGGGGCGGTTTGAGATTTTGTCATTGTCAGGTTCCTTTCTACTCAATGATGCTGGAGGAACTCCAACAAGAACTGGTGGCCTTAGTGTTTCACTAGCTGGGTCTGATGGTCGTGTTATTGGGGGCGGTGTGGGAGGTCTTCTCATGGCAGCAAGCCCTGTACAGGTAGTAGTTGGTACCTTCCTAGTTGATAACAAGAAGGATCTTGGGCGGGTTGGAAATGGTGAACCTTCCATCGGCACGTTATCAGGATCTGTTTCAGGGGGGTCTCCTTCACCTTCCGTTGCTGCACAATCTCGGGCAGAAGCTTCTGCTGCTACTAATCTGAGAAAAGGAGCTGAAGGTGAGCAAAATACTGGAGGTAGTAGTTATAATATGCAACCTCAAGGGTTAAGAATGATGTCCCTACAGGACTGGGCAGGTACTCATTTTGGGACCGAAACAAAGAGTGACACAGAGACAGCCTTGACAGGCAGAGCAAAACCAAGGGACCGAGATGATGGATCTAGATTTAACAAAGTGGACCAGGAAGGAGAGCGTAGAGGCCAACATATTACATTTGAGAACTAA___TGTTCTTGAGAAAATGTTTCCTAGAAAGAGGCATTCTGGCATGGTTAGAGGTTGATATAAAAGAGCTGGAGTGTCTTCATAAAGAGAGATTTTTGTATTTTTATTTTTGTCAGCTATTTCCATGTGTTGTAGACTAGATCTCTTTCTTCTGTAAACATAGTGTTTTAATTTTAAAATCTTTCATTGAGAGTCATCTTACCAAAAGTATATTGATGATGCTACATCATAACATGTTGTTCATATTAGATTGTAGCTGTTGGTTATATATCCAAGATTTTAAATTGTAACTACGCATCATTGAATGCCTTTTACCACCAGTGCATGGTAGAATTCCACTTTTCTTCCTATATAGACAACTGTTTTTGATACTTACCTCTGAGAGTCTAAACTCCAAAACTGGGAAACACCCAAATAGATGTAGCTGATTATCTCATAATTTGCGTTAAATGCAAGATAGGTAAGCACTGAATAATTTGTTATAGTT

Fln Alignment:

sp_v1.1_unigene23280___MEGRESNGPSPFNSYYHRXXXXXXXXXXXXXXXXXXXXAVFAAPQRPMVSPEQSLPMVXXXXXXXXXXXXPLYSEGPTAIFNHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVXXXXXXXXXXFSDKKARGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLNDAGGTPTRTGGLSVSLAXXXXXXXXXXXXXLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSIGTLXXXXXXXXXXXXXXXXXXXXXXXXTNLRKGAEGEQNTGGSSYNMQPQGLRMMSLQ--DWAGTHFGTETKSDTETALTGRAKPRDRDDGSRFNKVDQEGERRGQHITFEN
D5A9Z4_______________MEGRESNGPSPFNSFYHRTYTPNPNLNTPNSNPTTN--AVFTAPQRAMLSPEQSLNIVNNNNTANASASSPLYSEGPTAIFSHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVGLGLSSPSSPFSDKKGRGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLTDTGGTHTRTGGLSVSLAGSDGRVIGGGVGGLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSMGTLSGSMSGGSPSPSIAVQSRAETSAGTNLRKGGEGEQNTGGGTYNMQPQVLTMMSLQSMDWGGAHFEAETKSDTETALTGRTKPRDRDDGSRFKQVDQEEECRGQNITFEN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
55		66		33	0.997452
56		33	66		0.997452
59		66	33		0.997452
60	33	66			0.997452
63		66		33	0.997452
64	66			33	0.997452
65	66		33		0.997452
75		33		66	0.997452
80	33	33			0.997753
124	30			70	1.0
126	30		70		1.0
131	30	70			1.0
133		30		70	1.0
135		30	70		1.0
138		30		70	1.0
139		30	70		1.0
145		70		30	1.0
146	70			30	1.0
184		90	10		0.90298
1217		75		25	0.996473
1309		88	11		0.923564
1312		77	11	11	0.968132
1313	11	77	11		0.968132
1314	77	11		11	0.968132
1316		77	11		0.968132
1318			88	11	0.923564
1324		11		88	0.923564
1757		6		53	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
520	539	TCCCAA TCCCAA TCCCAA TC	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain