SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23278

Length: 1634 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23278

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphorylase family protein	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	phosphorylase family protein	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	0.0	62%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL97

Fln msg:

Fln protein: MGFVGFVRGSEAGITIILHWLDSMEFKALTLRVTVMVMALSLTYERGSSLPRNKKALRIASEINKEGPWIGLVTVYPPEEAAFMSTKVLKPHPKYPLLDLSGRRFRIGTIYGKKVIYVRCGVGMWNAGVTTQMMSDLFNIVGVVHFGIAGNANNSLSIGDVTVPKYVAHTGIWEWLKLEDTEEAVSVGRLVIGDYNVPQGKKINSLGKISYQPEEFYSESGKPNVPENLLWAKTSSQWFELARKFEGIRLSSCLNSTVCLPRPAKMVAGLRASTANIFIDNGPYRKFLFKHFQVASVDEESAAVVLTCLSNKLNVIVFRGMSDLAGSQQGENPIAIFGPLAARNVVKAILEFIKRLPKSALVT*

Protein Length: 365

Fln nts: ATGGGATCAACTGAACCACGAATCTAACCCCAAGAAGAACGTGTGTATTATCCGCAAGTCGGCTGTTTCATACGTACAGTCGTTTATCTTTTGTAAACGATAATGCGCCCCAACTGAGTGCTGGCCGTCCAAAGCAGCCGAATTTGACTGGCATTTGGAGACCGACTTCCATCCTTCTGGTCAGATACCCAATCTCTCTCCGTTCTCTTTGAT_-_ATGGGATTTGTAGGCTTCGTGCGTGGATCAGAAGCAGGGATTACAATCATATTACACTGGCTGGACAGTATGGAATTCAAAGCACTGACTCTTCGTGTTACAGTTATGGTAATGGCGCTGTCATTGACATATGAGAGGGGTTCATCTCTTCCTAGGAACAAGAAGGCCCTCAGAATAGCCAGTGAGATCAATAAAGAAGGACCGTGGATTGGTTTGGTCACTGTGTATCCACCAGAAGAAGCTGCCTTCATGTCCACAAAAGTTCTGAAGCCTCATCCCAAATACCCATTGCTCGACCTTTCTGGTCGTAGATTTCGGATTGGAACAATCTATGGCAAGAAGGTGATCTATGTAAGATGCGGTGTAGGAATGTGGAATGCAGGTGTAACGACTCAGATGATGTCCGATCTGTTTAATATAGTTGGAGTTGTGCATTTTGGTATTGCTGGCAATGCAAACAATTCTCTTTCAATAGGGGATGTAACAGTCCCCAAATATGTTGCCCACACTGGAATCTGGGAGTGGCTGAAATTAGAGGACACGGAGGAGGCAGTCAGTGTGGGAAGGTTAGTAATAGGGGACTACAATGTACCCCAAGGAAAGAAAATTAATAGTCTGGGAAAGATATCTTACCAACCCGAGGAGTTCTACAGCGAATCAGGGAAACCCAATGTGCCCGAAAACTTACTCTGGGCCAAAACGAGCTCACAGTGGTTTGAACTTGCAAGAAAATTTGAGGGAATTAGACTGTCATCATGTTTGAACTCAACTGTTTGCCTTCCAAGGCCGGCTAAAATGGTTGCTGGGCTGAGGGCCTCCACTGCAAATATTTTTATAGATAACGGTCCTTACAGAAAGTTTCTTTTCAAGCATTTTCAAGTGGCTTCTGTGGATGAAGAGAGTGCAGCAGTAGTTCTAACTTGTCTGTCAAACAAACTGAATGTCATTGTTTTCAGAGGGATGTCTGATTTGGCTGGATCCCAGCAAGGGGAGAATCCGATCGCTATTTTTGGGCCCTTGGCAGCTAGGAACGTTGTCAAGGCTATACTGGAGTTCATTAAGAGATTGCCCAAATCTGCTCTTGTTACATAG___TCACACAAATTCTGAGATCAATACAGCAGAGTAAATGCTACTGCATGCACTATACTCTGTAGCACAATAAATCTTGTTTATTTTGATGTAACATTGGAAATCTCACTTACACTGTATTGAGTTGGTCTTCCTTTAGGGTTGTAGTGAGAAAATAATTCCACTACTATAGGGTTGTAGTGAGAAAATAGTTCCACTACTAGAAGCTAAGGGGTTCACAGCCCAAGTGGAGGAGAAGTATTCTTTTGGATGCTTAATAAATCTCAAATCAAGGACTGTATCCCAATTACAAATGGTATTGCATATAATGACAATCTGAATATTCACGTTAC

Fln Alignment:

sp_v1.1_unigene23278___VMVMALSLTYERGSSLPRNKKALRIASEINKEGPWIGLVTVYPPEEAAFMSTKVLKPHPKYPLLDLSGRRFRIGTIYGKKVIYVRCGVGMWNAGVTTQMMSDLFNIVGVVHFGIAGNANNSLSIGDVTVPKYVAHTGIWEW----------LKLEDTEEAV-SVGRLVIGDYNVPQGKKI-NSLGKISYQPEEFYSESGKPNVPENLLWAKTSSQWFELARKFEGIRLSSCLNSTVCLPRPAKMVAGLRASTANIFIDNGPYRKFLFKHFQXXXXXXXXXXXXLTCLSNKLNVIVFRGMSDLAGSQQGE-NPIAIFGPLAARNVVKAILEFIKRL
B8LL97_______________IIVTALMVDLSSVDALLPLPKVQRIIRKINRHGPYLGIVVPNAFEMDPLLQSSSFNVSKT---LDVAGRRFHIGSIHKHRVIIVMSGLGMLNSGITTQLLLSFFEVKGVVHYGIAGNANSSLHIGDVTIPRYWAHTGLWNWQRYGDGPSDELSLESNGDYTRQIGYLDFANFTTPSNQSSGNLLNNVWYQPEEVFPVNGTPEVRQHAFWVPVDEHYYQIAKSLETLKLEGCLNSTTCLSNTPKAVLVERGSSANVFVDNAAYRNFLYTKFNISPIDMESAAVALVCLEQGLPFIAIRSLSDLAGGGTSESNQAAVFAGLASQNAVTAVIQFIKDL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
232	14		85		0.993533
237			14	85	0.993533
270		85	14		0.993533
352	16		83		0.994512
368		20	80		0.995493
400	50		50		1.0
417	60		40		1.0
511		25		75	0.996473
528		25		75	0.996473
552	85		14		0.993533
582	71		28		1.0
802	10		90		0.90298
939	88		11		0.923564
1259		14		85	0.993533
1422		16		83	0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain