SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23276

Length: 1956 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23276
CGTCGTGACCTTGGCTGTCACTCAGTGGCAATGGGAGAAATGGGAGCAAATACATGTGTGTCACCTTGTATATCGTTTTTGGTATTAATGCTGTCATTACTTGTAGTGGAGAAAGGGAGATCAATTCCAATTCCAAGCACGGCAGATGGCCCGCAGAAACCTGTAACAGTGCGTTTTGATCCATCCCTTCGTACAGGCAGCGAGGACCTTCCAATGAACAATACCAAACTGGCCAAGAGAGTCCCATCGATATTCCCAGAACAAATTTCTCTTGCCCTTTCAACCCACGATTCTATGTGGGTGTCATGGATTACAGGGGATGCTCAGATGGGGCCTACAGTTAAGCCTTTGGACCCTTCAAGTGTTGGAAGTGAGGTCCGCTATGGGACAGAGAGTGGGAAATATAAGTTTGTTCAAACTGGCGCTTCTTCTGTGTATAGCCAAATATACCCATACGAGGGCCTTCTCAATTATACTTCTGGCATCATTCATCATGTTCGTCTTCAAGGTCTTTCTTCAAATACAAAATACTACTACAAGTGTGGTGACAGTTCCTTGTCAGCTATGAGTGAAGAACATGTTTTCATTACCCCACCTTTGTCAAGTCCACATAGTTATCCTCATCGGATAGCAGTAATAGGAGATTTGGGTCTTACAAGCAATTCATCTACCACTATTGATCATGTTGTTAAAAATGATCCTTCATTGATTTTAATGGTTGGTGACTTGAGCTATGCAAACCAATACATTACTACCGGTGGTAAAGGGGCATCTTGTTTTCAATGTTCATTTCCAAATGCACCTATTAGAGAAACATATCAGCCTCGCTGGGATGGATGGGGCAGATTTATGGAGCCGTTGACCTCAAGAGTGCCTATGATGGTGATAGAAGGAAATCATGAAATAGAGCCTCAAGCAGAAGGGGAAACATTTGCTTCTTACAAGGCTCGGTTTGCAGTCCCATCCCAAGAATGTAGCTCAAACAGTAGTTTCTACTACTCGTTTAATGCCAGTGGAATACATTTTATCATGCTGGGAGCATATGTGGACTACAACAAAACTGGCATGCAATATGCTTGGCTGAAGCAAGATCTGGCGAATGTAGATCGTGAAGTTACACCATGGCTAGTTGCAGCATGGCACTCTCCCTGGTATAATAGCTATTCTTCACATTATCAGGAATTTGAGTGCATGAGGCAAGAAATGGAAGAACTTTTGTATGGATTTGGTGTGGACATAGTCTTCTCTGGACATGTACATGCATATGAAAGAATGAACAGAGTGTACAACTATAGTTTAAACCCATGTGGACCAGTATATATCACAGTTGGTGATGGTGGGAACATCGAGGGAATTGATACAGAATTTGCGGATGACCCAGGTAAGTGCCCTGGGCCTGGTGACAATCAACCTGAATATGGAGGGGTCTGCCACATCAACTTCACCTCCGGCCCTGCCAAAGGAAATTTCTGTTGGGACAAACAACCAGAATGGAGTGCATTCCGAGAGAGCAGCTTTGGACATGGCGTTCTAGAGGTATTAAATTCTACCGATGCTTTGTGGACATGGCACCGAAATCAGGATGCTTACACAGATAATGCCGTTGGGGATCAAATATACATTGTGAGACAGCCTGAAATTTGTCACTTGAAAAAGCGTAATCAGACCATTAATAGTCCACTTTCAAGTATCAATGCTAACTGTAACACACACGCATATTGTATGTATTTTTTATGTGGAGAAACGAATTTTAATCTCGTTAAAGGCATGTTACTGCTATTATTATTCTCAATGATGCATATTATTTAGGAAATAAATAATATGCAAACAAGAGAAGGATATCCATTTAGCAGTCAATGTATTATGACGATGATACAGAATAAAATATGTATGACATGAAATTCATGATAATGCCTCAGCGAGGTTGTGCTACAACATGTACTCTACTATACCAGA

Ace file of the UniGene sp_v1.1_unigene23276

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	purple acid phosphatase [Nicotiana tabacum]	-	-	60%
FL-Next	sp=Purple acid phosphatase 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Metallophosphoesterase domain	IPR004843	-	80%
Blast2go	Purple acid phosphatase-like, N-terminal	IPR008963	-	80%
Blast2go	Purple acid phosphatase, N-terminal	IPR015914	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SFU3

Fln msg: your sequence is longer than subject: 593 - 532

Fln protein: MGEMGANTCVSPCISFLVLMLSLLVVEKGRSIPIPSTADGPQKPVTVRFDPSLRTGSEDLPMNNTKLAKRVPSIFPEQISLALSTHDSMWVSWITGDAQMGPTVKPLDPSSVGSEVRYGTESGKYKFVQTGASSVYSQIYPYEGLLNYTSGIIHHVRLQGLSSNTKYYYKCGDSSLSAMSEEHVFITPPLSSPHSYPHRIAVIGDLGLTSNSSTTIDHVVKNDPSLILMVGDLSYANQYITTGGKGASCFQCSFPNAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQAEGETFASYKARFAVPSQECSSNSSFYYSFNASGIHFIMLGAYVDYNKTGMQYAWLKQDLANVDREVTPWLVAAWHSPWYNSYSSHYQEFECMRQEMEELLYGFGVDIVFSGHVHAYERMNRVYNYSLNPCGPVYITVGDGGNIEGIDTEFADDPGKCPGPGDNQPEYGGVCHINFTSGPAKGNFCWDKQPEWSAFRESSFGHGVLEVLNSTDALWTWHRNQDAYTDNAVGDQIYIVRQPEICHLKKRNQTINSPLSSINANCNTHAYCMYFLCGETNFNLVKGMLLLLLFSMMHII*

Protein Length: 594

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGCA_-_ATGGGAGAAATGGGAGCAAATACATGTGTGTCACCTTGTATATCGTTTTTGGTATTAATGCTGTCATTACTTGTAGTGGAGAAAGGGAGATCAATTCCAATTCCAAGCACGGCAGATGGCCCGCAGAAACCTGTAACAGTGCGTTTTGATCCATCCCTTCGTACAGGCAGCGAGGACCTTCCAATGAACAATACCAAACTGGCCAAGAGAGTCCCATCGATATTCCCAGAACAAATTTCTCTTGCCCTTTCAACCCACGATTCTATGTGGGTGTCATGGATTACAGGGGATGCTCAGATGGGGCCTACAGTTAAGCCTTTGGACCCTTCAAGTGTTGGAAGTGAGGTCCGCTATGGGACAGAGAGTGGGAAATATAAGTTTGTTCAAACTGGCGCTTCTTCTGTGTATAGCCAAATATACCCATACGAGGGCCTTCTCAATTATACTTCTGGCATCATTCATCATGTTCGTCTTCAAGGTCTTTCTTCAAATACAAAATACTACTACAAGTGTGGTGACAGTTCCTTGTCAGCTATGAGTGAAGAACATGTTTTCATTACCCCACCTTTGTCAAGTCCACATAGTTATCCTCATCGGATAGCAGTAATAGGAGATTTGGGTCTTACAAGCAATTCATCTACCACTATTGATCATGTTGTTAAAAATGATCCTTCATTGATTTTAATGGTTGGTGACTTGAGCTATGCAAACCAATACATTACTACCGGTGGTAAAGGGGCATCTTGTTTTCAATGTTCATTTCCAAATGCACCTATTAGAGAAACATATCAGCCTCGCTGGGATGGATGGGGCAGATTTATGGAGCCGTTGACCTCAAGAGTGCCTATGATGGTGATAGAAGGAAATCATGAAATAGAGCCTCAAGCAGAAGGGGAAACATTTGCTTCTTACAAGGCTCGGTTTGCAGTCCCATCCCAAGAATGTAGCTCAAACAGTAGTTTCTACTACTCGTTTAATGCCAGTGGAATACATTTTATCATGCTGGGAGCATATGTGGACTACAACAAAACTGGCATGCAATATGCTTGGCTGAAGCAAGATCTGGCGAATGTAGATCGTGAAGTTACACCATGGCTAGTTGCAGCATGGCACTCTCCCTGGTATAATAGCTATTCTTCACATTATCAGGAATTTGAGTGCATGAGGCAAGAAATGGAAGAACTTTTGTATGGATTTGGTGTGGACATAGTCTTCTCTGGACATGTACATGCATATGAAAGAATGAACAGAGTGTACAACTATAGTTTAAACCCATGTGGACCAGTATATATCACAGTTGGTGATGGTGGGAACATCGAGGGAATTGATACAGAATTTGCGGATGACCCAGGTAAGTGCCCTGGGCCTGGTGACAATCAACCTGAATATGGAGGGGTCTGCCACATCAACTTCACCTCCGGCCCTGCCAAAGGAAATTTCTGTTGGGACAAACAACCAGAATGGAGTGCATTCCGAGAGAGCAGCTTTGGACATGGCGTTCTAGAGGTATTAAATTCTACCGATGCTTTGTGGACATGGCACCGAAATCAGGATGCTTACACAGATAATGCCGTTGGGGATCAAATATACATTGTGAGACAGCCTGAAATTTGTCACTTGAAAAAGCGTAATCAGACCATTAATAGTCCACTTTCAAGTATCAATGCTAACTGTAACACACACGCATATTGTATGTATTTTTTATGTGGAGAAACGAATTTTAATCTCGTTAAAGGCATGTTACTGCTATTATTATTCTCAATGATGCATATTATTTAG___GAAATAAATAATATGCAAACAAGAGAAGGATATCCATTTAGCAGTCAATGTATTATGACGATGATACAGAATAAAATATGTATGACATGAAATTCATGATAATGCCTCAGCGAGGTTGTGCTACAACATGTACTCTACTATACCAGA

Fln Alignment:

sp_v1.1_unigene23276___IPSTADGPQKPVTVRFDPSLRTGSEDLPMNNTKLAKRVPSIFPEQISLALST-HDSMWVSWITGDAQMGPTVKPLDPSSVGSEVRYGTESGKYKFVQTGASSVYSQIYPYEGLLNYTSGIIHHVRLQGLSSNTKYYYKCGDSSLSAMSEEHVFITPPLSSPHSYPHRIAVIGDLGLTSNSSTTIDHVVKNDPSLILMVGDLSYANQYITTGGKGASCFQCSFPNAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQAEGETFASYKARFAVPSQECXXXXXXXXXXXASGIHFIMLGAYVDYNKTGMQYAWLKQDLANVDREVTPWLVAAWHSPWYNSYSSHYQEFECMRQEMEELLYGFGVDIVFSGHVHAYERMNRVYNYSLNPCGPVYITVGDGGNIEGIDTEFADDPGKCPGP-GDNQPEYGGVCHINFTSGPAKGNFCWDKQPEWSAFRESSFGHGVLEVLNSTDALWTWHRNQDAYTDNAVGDQIYIVRQPEICHLKKR
Q9SFU3_______________IPSTLDGPFVPVTVPLDTSLRGQAIDLPDTDPRVRRRVIGFEPEQISLSLSSDHDSIWVSWITGEFQIGKKVKPLDPTSINSVVQFGTLRHSLSHEAKGHSLVYSQLYPFDGLLNYTSGIIHHVRITGLKPSTIYYYRCGDPSRRAMSKIHHFRTMPVSSPSSYPGRIAVVGDLGLTYNTTDTISHLIHNSPDLILLIGDVSYANLYLTNG-TSSDCYSCSFPETPIHETYQPRWDYWGRFMENLTSKVPLMVIEGNHEIELQAENKTFEAYSSRFAFPFNESGSSSTLYYSFNAGGIHFVMLGAYIAYDKSAEQYEWLKKDLAKVDRSVTPWLVASWHPPWYSSYTAHYREAECMKEAMEELLYSYGTDIVFNGHVHAYERSNRVYNYELDPCGPVYIVIGDGGNREKMAIEHADDPGKCPEPLTTPDPVMGGFCAWNFT---PSDKFCWDRQPDYSALRESSFGHGILEMKNETWALWTWYRNQDSSSE--VGDQIYIVRQPDRCPLHHR

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
279		20		80	0.995493
288	90			10	0.90298
291	90			10	0.90298
292			10	90	0.90298
293	10			90	0.90298
295		10		90	0.90298
302		10	90		0.90298
547		33		66	1.0
921	66		33		0.997452
1259	80		20		0.995493
1308			12	87	0.992554
1314		12	87		0.992554
1330	12	87			0.992554
1331	87	12			0.992554
1370	80			20	0.995493
1392		16		83	0.994512
1394		83		16	0.994512
1396		83	16		0.994512
1399	16		83		0.994512
1400	16	16	66		0.988813
1402		83		16	0.994512
1408	83			16	0.994512
1411	83	16			0.994512
1417	20	80			0.995493
1430			80	20	0.995493
1451		83	16		0.994512
1454		83	16		0.994512
1455			83	16	0.994512
1457	16	83			0.994512
1463		83	16		0.994512
1464	80			20	0.995493
1465	80	20			0.995493
1467		20	80		0.995493
1468			80	20	0.995493
1469	75	25			0.996473
1523			11	88	0.923564
1525		11		88	0.923564
1530	88			11	0.923564
1537	11			88	0.923564
1541		11	88		0.923564
1564		44		55	1.0
1741	87	12			0.992554
1777	14		85		0.993533
1866	33		66		0.997452
1902		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain