SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23272

Length: 456 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene23272
CGTCGTGACCTTGGCTGTCACTCATGGATGCGTCGTGACCTTGGCTGTCACTCAGGGGCCGTTTGGGGAAACAGTACTCCGAATCTGGAGGGACGAGCTCTCTCCTTTATCGTAACGTTGCGCAATGGGAAGACGCGCACTTTCAACAACGTAATCCCTCCCAACTGGCATTTTGGGCAGTCCTTCGTGAGTACTATTCAGTTCTAATAATTATATGTCCACATGAATAACTCTGTTACCCATAACCATCTTTGTCAACGTAGCTTGTTATAGCTTTGGCTTCTCCTGCTTTTTCCGTGTGAGAATAACAATGGTCGTCTATTTCTCTGTGGTGTCTTAGATAGGTTTCCAAGACTCTAAATTCTCTCAAAAAGGGCTTCTGAGACTCTAAATTCTCTGAACAAGAACTTCTGTGTGGTAGTTGTGTTCTGCATCATTTTCTCCTGAGGCAAGAAT

Ace file of the UniGene sp_v1.1_unigene23272

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin S2 n=1 Tax=Cucumis sativus RepID=Q39626_CUCSA	-	-	2.0e-06	50%
FL-Next	sp=Expansin-A13; Oryza sativa subsp. japonica (Rice).	-	-	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pollen allergen/expansin, C-terminal	IPR007117	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q4PR52

Fln msg: your sequence is shorter than subject: 69 - 262

Fln protein: RRDLGCHSWMRRDLGCHSGAVWGNSTPNLEGRALSFIVTLRNGKTRTFNNVIPPNWHFGQSFVSTIQF*

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGATGCGTCGTGACCTTGGCTGTCACTCAGGGGCCGTTTGGGGAAACAGTACTCCGAATCTGGAGGGACGAGCTCTCTCCTTTATCGTAACGTTGCGCAATGGGAAGACGCGCACTTTCAACAACGTAATCCCTCCCAACTGGCATTTTGGGCAGTCCTTCGTGAGTACTATTCAGTTCTAA___TAATTATATGTCCACATGAATAACTCTGTTACCCATAACCATCTTTGTCAACGTAGCTTGTTATAGCTTTGGCTTCTCCTGCTTTTTCCGTGTGAGAATAACAATGGTCGTCTATTTCTCTGTGGTGTCTTAGATAGGTTTCCAAGACTCTAAATTCTCTCAAAAAGGGCTTCTGAGACTCTAAATTCTCTGAACAAGAACTTCTGTGTGGTAGTTGTGTTCTGCATCATTTTCTCCTGAGGCAAGAAT

Fln Alignment:

sp_v1.1_unigene23272___GAVWGNSTPNLEGRALSFIVTLRNGKTRTFNNVIPPNWHFGQSFVSTIQF
Q4PR52_______________GAQW-HSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFASNIQF

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
84		60		40	1.0
87	60	40			1.0
88		40		60	1.0
89		60		40	1.0
91		14	85		0.993533
93		42		14	1.0
94	42	14		42	1.0
96			42	42	1.0
97		28	71		1.0
98	85			14	0.993533
101		20	60	10	0.999999
102	90		10		0.90298
103	10		70		0.999998
108	10	90			0.90298
111	10	90			0.90298
122	10	90			0.90298
124		10		90	0.90298
127		90		10	0.90298
132		10		90	0.90298
157	10		90		0.90298
180		10		90	0.90298
207	63		36		1.0
260	29		70		1.0
279	58		41		1.0
331	33	66			1.0
335	20		80		1.0
339		66		33	1.0
340		33	66		1.0
341		13		86	0.999973
355		40	60		1.0
360	21		78		1.0
375		35	64		1.0
378	35	64			1.0
382	16		83		0.994512
383	16		83		0.994512
385		16		83	0.994512
390	83			16	0.994512
395		50	16		1.0
396			16	50	1.0
397	83			16	0.994512
399	83		16		0.994512
402		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain