SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23252

Length: 551 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23252
CGTCGTGACCTTGGCTGTCACTCAACCATTATCAGTGGGGATTCTGGATTCTCCCCTAAAATACTGAGCGACGGGATCCTTTTCTTTTAGTCAGGTTTTAGGGTTTCGGAGGTGCCAAACCTTGAAAGAATTCCTCTGATTTCTGGAGTTCGTACACGCATTCAGAAATTTACAGGTTAGGGTCAGAGTTAGGACAGAGGAGGTGCTTTCGGTGAAGATTGATCGATCCTCTTTAACGGAAAGTGTAGATCATCACAATGCAGCCCGCTGCGAGGCGAGCCACCCAGCTTCGCCCTCTCATGGGCGGTAATGCGTTTTTGGGACTGCGGTATGCTTTCCCTGTTCAGGGAGCTTCATCTGATTACAAGTTCGATCATTCGCGGTCTGCATCATCGCTGACTGATAAGGGCATTGGGCACCTTATTCGCAAGGGAACCGGAGGGAGATCATCTGTCAGCGGTATCATTGCAACCGTCTTTGGAGCCACGGGCTTCCTCGGTCGATATGTTGTGCAGCAACTTGCTAAGACGGGTTCTCAAGTTCTGGTTCCC

Ace file of the UniGene sp_v1.1_unigene23252

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	binding / catalytic/ coenzyme binding; K03953 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 [EC:1.6.5.3 1.6.99.3]	-	-	1.0e-22	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	1.62551e-43	83%

Source	ECs	Term	Type	e value	Identity
AutoFact	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	1.0e-22	61%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Oxidative phosphorylation	00190		1.0e-22	61%
AutoFact	Metabolic pathways	01100		1.0e-22	61%
AutoFact	NADH dehydrogenase.	EC:1.6.99.3	-	1.0e-22	61%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Oxidative phosphorylation	00190		1.0e-22	61%
AutoFact	Metabolic pathways	01100		1.0e-22	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	1.62551e-43	83%
Blast2go	respiratory chain complex I	GO:0045271	Cellular Component	1.62551e-43	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.62551e-43	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD(P)-binding domain	IPR016040	-	1.62551e-43	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP2

Fln msg: Distance to subject end: 303 aas, your sequence is shorter than subject: 98 - 401

Fln protein: MQPAARRATQLRPLMGGNAFLGLRYAFPVQGASSDYKFDHSRSASSLTDKGIGHLIRKGTGGRSSVSGIIATVFGATGFLGRYVVQQLAKTGSQVLVP

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCATTATCAGTGGGGATTCTGGATTCTCCCCTAAAATACTGAGCGACGGGATCCTTTTCTTTTAGTCAGGTTTTAGGGTTTCGGAGGTGCCAAACCTTGAAAGAATTCCTCTGATTTCTGGAGTTCGTACACGCATTCAGAAATTTACAGGTTAGGGTCAGAGTTAGGACAGAGGAGGTGCTTTCGGTGAAGATTGATCGATCCTCTTTAACGGAAAGTGTAGATCATCACA_-_ATGCAGCCCGCTGCGAGGCGAGCCACCCAGCTTCGCCCTCTCATGGGCGGTAATGCGTTTTTGGGACTGCGGTATGCTTTCCCTGTTCAGGGAGCTTCATCTGATTACAAGTTCGATCATTCGCGGTCTGCATCATCGCTGACTGATAAGGGCATTGGGCACCTTATTCGCAAGGGAACCGGAGGGAGATCATCTGTCAGCGGTATCATTGCAACCGTCTTTGGAGCCACGGGCTTCCTCGGTCGATATGTTGTGCAGCAACTTGCTAAGACGGGTTCTCAAGTTCTGGTTCCC

Fln Alignment:

sp_v1.1_unigene23252___MQPAARRATQLRPLMGGNAFLGLRYAFPVQGASSDYKFDHSRSASSLTDKGIGHLIRKGTGGRSSVSGIIATVFGATGFLGRYVVQQLAKTGSQVLVP
A9NUP2_______________MQAAARRAAQLRPLSDGNPFLGLRYAFPVQGTSSEYKFDHSRSASSLTDKGIGHLIRKGTGGRSSVSGIIATVFGATGFLGRYVVQQLAKTGSQVLVP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
182		14	85		0.993533
194	42		57		1.0
246	50			50	1.0
300	40		60		1.0
324		25		75	0.996473
375		63		36	1.0
428		66	33		1.0
497		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain