SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23210

Length: 751 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23210

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tfiif-alpha, putative; K03138 transcription initiation factor TFIIF alpha subunit	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	0.0	82%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription initiation factor IIF, alpha subunit	IPR008851	-	0.0	82%
Blast2go	Transcription Factor IIF, Rap30/Rap74, interaction	IPR011039	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
29		75		25	0.996473
30		25		25	0.995533
117	11		88		0.999937
153		11	88		0.999952
158		11		88	0.999952
170	10		84	5	0.999846
202			17	82	1.0
210		17	82		1.0
212	17		82		1.0
290	76		23		1.0
312		21		78	1.0
589	25			75	0.996473
616		75	25		0.996473
646	20	80			0.995493
660		25		75	0.996473
666	75		25		0.996473
678		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain