SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23208

Length: 729 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene23208 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WHY1; WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding	-	-	1.0e-25	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	dna-binding protein p24	-	-	3.12672e-38	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of telomere maintenance via telomerase	GO:0032211	Biological Process	3.12672e-38	73%
Blast2go	telomeric DNA binding	GO:0042162	Molecular Function	3.12672e-38	73%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	3.12672e-38	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.12672e-38	73%
Blast2go	nucleus	GO:0005634	Cellular Component	3.12672e-38	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ssDNA-binding transcriptional regulator	IPR009044	-	3.12672e-38	73%
Blast2go	Plant transcription factor	IPR013742	-	3.12672e-38	73%

Full-Lengther Next Prediction

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
197		83		16	0.994512
350	11		88		0.923564
358			11	88	0.923564
359			11	88	0.923564
360	88			11	0.923564
363	90		10		0.90298
379		11		88	0.923564
380		11		88	0.923564
383	88		11		0.923564
388			11	88	0.923564
449			81	18	0.999994
451	18	81			0.999994
452			18	81	0.999994
454			15	84	0.999986
455	15			84	0.999986
456		15		84	0.999986
457	15			84	0.999986
458		84	15		0.999986
462	15			84	0.999986
463	76		15	7	0.999983
464		76	23		1.0
467		15	84		0.999986
471			15	76	0.999983
483	81	18			0.999994
485	18			81	0.999994
488		90		10	0.90298
491		10	90		0.90298
492	90		10		0.90298
494		10		90	0.90298
495		80	20		0.999996
497		11		88	0.923564
500		11	88		0.923564
501		11	88		0.923564
502	11			88	0.923564
503	11			88	0.923564
504			11	88	0.923564
505			12	87	0.992554
508	12		87		0.992554
540	85		14		0.993533
541	14	85			0.993533
543			85	14	0.993533
544		85	14		0.993533
548	85	14			0.993533
549		14		85	0.993533
552	85		14		0.993533
553	85		14		0.993533
554	14			85	0.993533
555		14		85	0.993533
556	14		71	14	0.984337
557	71	14		14	0.984337
558	71		28		1.0
566	16			83	0.994512
569	83	16			0.994512
570	16			83	0.994512
572	83		16		0.994512
573		83	16		0.994512
575		16	83		0.994512
579	83	16			0.994512
580			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain