SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23204

Length: 772 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23204

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NMG7_PICSI	-	-	96%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	proteasome component c5	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	0.0	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	77%
Blast2go	Proteasome, beta-type subunit, conserved site	IPR016050	-	77%
Blast2go	Proteasome B-type subunit	IPR023333	-	77%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
205	88		11		0.923564
492	20			80	0.995493
494		20		80	0.995493
495	80		20		0.995493
503	80	20			0.995493
504	80			20	0.995493
506	80		20		0.995493
509	80		20		0.995493
514		20	80		0.995493
684		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain