SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23203

Length: 1536 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23203

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to plasma membrane H+ ATPase	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	plasma membrane h+ atpase	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	0.0	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	95%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	95%
Blast2go	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	95%
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	95%
Blast2go	ATPase, P-type, transmembrane domain	IPR023298	-	95%
Blast2go	ATPase, P-type, cytoplasmic transduction domain A	IPR023300	-	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Distance to subject end: 645 aas, your sequence is shorter than subject: 307 - 955

Fln protein: MGDKAATLEAINKEAVDLENIPIEEVFENLRCSREGLSSQAAQERLTIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAVMAIAMANGGGKPPDWQDFVGILTLLVINSTISFIEENNAGNAAAALMARLAPKGKVLRDGQWSEEDAAVLVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGELECVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMIVEIIVMYPIQDRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGCCCCATAATGTCGAAGCTCATATCGAAATTGTTGTAGGAAAAATATATTTGCTGCAGGATTAGCACGTTCCTTAACGACAAAAGGAGGTTGGTGTTTGGTAAGGTAGGGTGGAAGAAGAGCAATCTTCATTTTGCACCTACCTTCAGTGGTTACCAATTTTGGGTGTTGTTGTCACTCCAGATTTCTTTGCTGGATAGGCCAAGCAAGCAGACTTAGCATACTTCATGTATATGAACGGATATATTTTGGTTACGTAATGCCCAGGTTTGTAGTGAGGCCATGGTGAAAAGGGTAAGTGAGAATAAAAGCAATAACAGTGAATTTTGGACACCTGGAAACTCATCCTATATTATATATCGGATTCCACATCTCACATTCTTTCTTTCTGTCAACTGAAATCTCATCTTTCTACTGGTTTTTTTGTAAGCCCAACGCTGTTTTTCACGTCCCCAGTTCGAATCTCCTCAGCTCAAGTGTTTGGTGATTGGCATATCGAAGCAAATAGAGCTCGGTGATGCATTGATCGCTGGATTGCATGTGTGTATCTTGTGGGCGCCGGGGCGGTGAGTAAACCCGATTTGCGGAA_-_ATGGGTGACAAGGCTGCGACTCTGGAAGCCATTAACAAAGAAGCTGTGGATTTGGAAAATATTCCCATCGAAGAGGTTTTTGAGAATCTAAGATGCAGCAGGGAGGGTTTGAGCAGCCAAGCTGCGCAGGAGAGGCTCACTATATTCGGATACAACAAGCTCGAAGAGAAAAAGGAAAGCAAATTTCTCAAGTTTTTGGGTTTTATGTGGAACCCCTTATCATGGGTTATGGAAGCCGCAGCTGTGATGGCCATTGCTATGGCGAATGGAGGAGGAAAACCTCCTGACTGGCAAGATTTTGTTGGTATTCTAACATTGCTTGTTATAAACTCTACCATAAGTTTCATAGAGGAAAACAATGCTGGCAATGCTGCTGCGGCACTGATGGCTCGGCTGGCTCCAAAGGGCAAGGTTCTCAGAGATGGACAATGGAGTGAAGAAGATGCAGCGGTGCTTGTTCCTGGTGACATAATCAGCATCAAACTTGGAGATATTGTTCCTGCGGATGCGCGTCTTCTTGAAGGAGATCCTTTAAAGATTGATCAGTCTGCCCTCACTGGTGAGTCATTACCAGTAACAAAGGGTCCTGGTGATGGGGTTTATTCTGGCTCTACTTGCAAACAGGGTGAACTTGAATGTGTTGTCATTGCTACTGGGGTCCATACCTTTTTTGGTAAAGCAGCACATCTTGTGGACAGTACAAACCAAGTTGGCCACTTCCAAAAGGTTTTGACGGCAATTGGGAATTTCTGCATTTGCTCAATTGCGATTGGCATGATAGTTGAGATCATTGTTATGTATCCAATTCAAGACCGTAAATATCGTCCTGGAATAGATAACCTTCTAGTTCTCCTCATTGGTGGGATTCCGATAGCAATGCCTACTGTCCTTTCTGTGACAATGGCTATTGGATCCCACCGT

Fln Alignment:

sp_v1.1_unigene23203___DKAAT--LEAINKEAVDLENIPIEEVFENLRCSREGLSSQAAQERLTIFGYNXXXXXXXXXXXXXXXXMWNPLSWXXXXXXXXXXXXXNGGGKPPDWQDFVGILTLLVINSTISFIEEXXXXXXXXXXXXXXXPKGKVLRDGQWSEEDAAVLVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGELECVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMIVEIIVMYPIQDRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR
B8LQS1_______________DEKATSGLEGIKNESVDLERIPIEEVFEQLRCTREGLTSNEGENRLQIFGFNKLEEKKESKFLKFLGFMWNPLSWVMEIAAIMAIALANGDNKPPDWQDFLGIVVLLVINSTISFVEENNAGNAAAALMAGLAPKTKVLRDGRWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGEEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGIVIEIIVMYPIQHRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHR

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
131			80	20	0.995493
134	80		20		0.995493
150	60	40			1.0
197	11		88		0.923564
199			11	88	0.923564
201			11	88	0.923564
202		88	11		0.923564
216			22	77	0.999999
249	77		22		0.999999
266		28	71		1.0
358		85		14	0.993533
359	85		14		0.993533
360		85	14		0.993533
361		85	14		0.993533
362			14	85	0.993533
440	85			14	0.993533
442			16	83	0.994512
443		25	75		0.996473
444	25		75		0.996473
445			33	66	0.997452
447			33	66	0.997452
448	33			66	0.997452
449			33	66	0.997452
453	33			66	0.997452
454	66	33			0.997452
457		66	33		0.997452
779	90	10			0.90298
784	85			14	0.993533
785	85		14		0.993533
787	83	16			0.994512
791	80	20			0.995493
792	80	20			0.995493
1032		85	14		0.993533
1087	87		12		0.992554
1089		87	12		0.992554
1091		12	87		0.992554
1093	87			12	0.992554
1095		87	12		0.992554
1096	87		12		0.992554
1097	87	12			0.992554
1098	87			12	0.992554
1099		87	12		0.992554
1101		12		87	0.992554
1102	12		87		0.992554
1103		12	87		0.992554
1104	85			14	0.993533
1105		14	85		0.993533
1196	89	10			0.999919
1198			89	10	0.999919
1200	10			89	0.999919

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain