SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23180

Length: 581 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23180

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=7 Tax=Spermatophyta RepID=A5AKG7_VITVI	-	-	1.0e-37	64%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	histone z	-	-	3.12072e-38	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	3.12072e-38	85%
Blast2go	flower development	GO:0009908	Biological Process	3.12072e-38	85%
Blast2go	protein binding	GO:0005515	Molecular Function	3.12072e-38	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H2A	IPR002119	-	3.12072e-38	85%
Blast2go	Histone core	IPR007125	-	3.12072e-38	85%
Blast2go	Histone-fold	IPR009072	-	3.12072e-38	85%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
120			40	60	1.0
124		40		60	1.0
125	20	40	40		1.0
126	60			40	1.0
127	60			40	1.0
129			40	60	1.0
133	60			40	1.0
134		40	60		1.0
136		40	60		1.0
139	20		80		0.995493
146	80	20			0.995493
170		20	80		0.995493
191		20		80	0.995493
196	20		80		0.995493
234	20	80			0.995493
236	20			80	0.995493
241	80		20		0.995493
247		40		60	1.0
312	45	54			1.0
316		63	36		1.0
322	45		54		1.0
325		54		45	1.0
332			54	45	1.0
349	54	36		9	1.0
362		18	81		0.999994
363		81	18		0.999994
367	54		45		1.0
381		75	25		1.0
389			83	16	0.994512
410	33			66	0.997452
449	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain